PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g061370.1
Common NameMTR_140s0006, MTR_3g061370
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 282aa    MW: 32578.2 Da    PI: 9.7101
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g061370.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.84.6e-1416961197
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                     ++++r+ +p kf+++hg     s  +++++++  +W+v+   +k  g+++++kGWk F +   L  g  vvF+++g+  f++ v ++
  Medtr3g061370.1 16 TNLHRIQIPSKFTKRHGVG--LSNPVVIKTPDDTKWKVYW--KKINGEIWFEKGWKTFTENYSLGHGCLVVFEYKGT--FKFDVVIL 96
                     567899**********644..5567***************..99999**************************9884..54466555 PP
2B337.83.4e-122162783296
                      --SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  32 esktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++ t ++     rsW+vkl     ++++  l++GW  F+++ gLk+gD++vF+l+++++   v+k+
  Medtr3g061370.1 216 KD-TNVMLLIGKRSWNVKLLRsYEGKNGRRLSAGWYLFARESGLKSGDVCVFELINKKDL--VFKI 278
                      33.333344567*******444333334579***********************987776..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.956699IPR003340B3 DNA binding domain
SuperFamilySSF1019361.53E-19799IPR015300DNA-binding pseudobarrel domain
CDDcd100175.88E-13896No hitNo description
Gene3DG3DSA:2.40.330.101.2E-18899IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-13999IPR003340B3 DNA binding domain
PfamPF023622.2E-111694IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-12186280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-12186280IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.5E-4189278IPR003340B3 DNA binding domain
CDDcd100174.77E-10189281No hitNo description
PfamPF023622.2E-9219278IPR003340B3 DNA binding domain
PROSITE profilePS5086311.589227281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MARGNSIRFF KIILQTNLHR IQIPSKFTKR HGVGLSNPVV IKTPDDTKWK VYWKKINGEI  60
WFEKGWKTFT ENYSLGHGCL VVFEYKGTFK FDVVILGKNA LEIDYDTSCD SDDENDNVDH  120
SDDDESVEIL DEWLNRKKAR QRSPFVSSRP HKKVQGDDEK TTKRTSSMNW PKDVRAQEVA  180
QNFISCNPFF TILIKPINLV EHTRSVPDLK GVIENKDTNV MLLIGKRSWN VKLLRSYEGK  240
NGRRLSAGWY LFARESGLKS GDVCVFELIN KKDLVFKIHV Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g061370.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0095110.0CT009511.9 M.truncatula DNA sequence from clone MTH2-69I7 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600455.10.0B3 domain-containing protein At3g18960
TrEMBLG8A2Z20.0G8A2Z2_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGAES707060.0(Medicago truncatula)
STRINGAES858300.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-17B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]