PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g062440.1
Common NameMTR_3g062440
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 259aa    MW: 28570.8 Da    PI: 8.4628
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g062440.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43e-17114163255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++GVr ++ +grW +eIrd + +   rkr +lg+f t++eAa+ ++aa+ k++g
  Medtr3g062440.1 114 IFRGVRKRP-SGRWISEIRDpF-Q---RKRLWLGTFNTEKEAAAVYDAAAAKIYG 163
                      69*******.7*********55.3...5**********99***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381235.1E-551258IPR017392AP2/ERF transcription factor ERF/PTI6
SuperFamilySSF541715.36E-18113173IPR016177DNA-binding domain
CDDcd000182.87E-19113174No hitNo description
Gene3DG3DSA:3.30.730.101.2E-24114173IPR001471AP2/ERF domain
SMARTSM003801.3E-29114178IPR001471AP2/ERF domain
PROSITE profilePS5103221.048114172IPR001471AP2/ERF domain
PfamPF008474.0E-10114163IPR001471AP2/ERF domain
PRINTSPR003676.3E-7115126IPR001471AP2/ERF domain
PRINTSPR003676.3E-7137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MTVQSTLKLQ NPSSSNFEPD PSCKTTTKTK PNNKKLLRVI FTDHNATDSE SSGDDETPRR  60
VKKEITNITM QFPSLTDSQA TSPSSSSCSI NPTHLNKPRK RPTKNSGGSN RRSIFRGVRK  120
RPSGRWISEI RDPFQRKRLW LGTFNTEKEA AAVYDAAAAK IYGPKVAAVN FPNDASDKKS  180
VKGSPEIFSG DGFASPTSVL PFCDGETPFD GLRYGAVDAF GFDIDAPLNL TDVNFVPFEK  240
EKEEFGEFDL DEFLTWPS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.142540.0root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g062440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4682800.0CU468280.5 M.truncatula DNA sequence from clone MTH2-97H11 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600540.10.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLG7IV400.0G7IV40_MEDTR; Integrase-type DNA-binding superfamily protein
STRINGAES707910.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-18cytokinin response factor 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]