PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g064580.1
Common NameMTR_3g064580
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 673aa    MW: 76914.7 Da    PI: 5.9422
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g064580.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.93.3e-5661331128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeelv++yLk+k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd++v
  Medtr3g064580.1   6 LPPGFRFHPTDEELVSYYLKRKINGRRIEL-EIIPEVDLYKCEPWDLPgKsLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKV 98 
                      79****************************.99***************6434445667************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + ++++vg+kktLv+y+grap+g++t Wvmheyrl
  Medtr3g064580.1  99 NA-QTRAVGMKKTLVYYRGRAPHGSRTGWVMHEYRL 133
                      *9.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-644157IPR003441NAC domain
PROSITE profilePS5100561.8176157IPR003441NAC domain
PfamPF023651.3E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV SYYLKRKING RRIELEIIPE VDLYKCEPWD LPGKSLLPGK  60
DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNA QTRAVGMKKT LVYYRGRAPH  120
GSRTGWVMHE YRLDERECDN PSSGLQDAYA LCRIFKKSTV IAPKIGEQYV NNVARHANHI  180
TSDQSSSIEL YSEGRDEVIG TSNYLMPWDP STSQNNGTNT LNNNGGNITR DDGIWTQFLS  240
EDLLSLPISS SFPNYGSTPN YPPSKVDIAL ECARMQHRFS LPPLEVEDFP QVGMNSELKM  300
TQLVSGSMSG TRNETDILQE ILSVAQASQE LINQSNYSHA FGGNENYAAD HENDFTFMVG  360
NNYNHVTDHM NSMRYIDDKA WEDPNTRSIE IGDLDNEFKA ERMVENLRWV GMSSNDLEKS  420
FMEEHQKVVP IEDISTFKTN RKENEVQVES EQQNINKEIN DGNIDNFSMG FINDNDTNEN  480
FIDDSNIDYS NSTSYEVVEE TTKVSHGMFV ATRQVADTFF HQITPSQTIK VQLNPILENK  540
KSIENAETMI IPKNQGYSLL RKFKANLMKY MKNPSKIIAS AIVFIFALFL VLCVYLKEQV  600
EDMKPKSEYV KRKYSYGANS MKKIIWNEQE KIWFVGIKSG KGFEVILKKI GIFLTISLAL  660
CTMWANHMIV CY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-56215711168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.121982e-35root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g064580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1518220.0AC151822.29 Medicago truncatula clone mth2-32h21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600640.10.0NAC domain-containing protein 86
TrEMBLG7J7Z70.0G7J7Z7_MEDTR; NAC transcription factor-like protein
STRINGAES708910.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-163NAC domain containing protein 28
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]