PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g065020.1
Common NameMTR_3g065020
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 239aa    MW: 26423.4 Da    PI: 6.6739
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g065020.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002588110123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C + F ++  L  H++ H
  Medtr3g065020.1  88 FSCNYCRRKFYSSQALGGHQNAH 110
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.76E-685115No hitNo description
PROSITE profilePS5015711.38588115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MKPIFDLEVE ATEEYESDVS SHVASTISTH QIETSTGSYS NSLSNSDSIS LDLTLNFNNN  60
DLVVRDSTGI SFSSTSESSN ELTIQRVFSC NYCRRKFYSS QALGGHQNAH KRERTLAKRA  120
MRIGLFTERY ACLASLPLNG SFRALGIKTH SSLHHGFSPP TIRPSPEIKS NVRFKQGSIG  180
HPIFLEDDET ELMWQGSFHQ VTKGGSNTHQ SSNMCFSEVN VKPLVDIENS APELTLKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.97210.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g065020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1488180.0AC148818.15 Medicago truncatula clone mth2-39c7, complete sequence.
GenBankBT1377560.0BT137756.1 Medicago truncatula clone JCVI-FLMt-15N18 unknown mRNA.
GenBankCR9403060.0CR940306.3 M.truncatula DNA sequence from clone MTH2-10B11 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600679.11e-177zinc finger protein 4
RefseqXP_024633962.11e-177zinc finger protein 4
RefseqXP_024633963.11e-177zinc finger protein 4
RefseqXP_024633964.11e-177zinc finger protein 4
TrEMBLG7J8Q31e-176G7J8Q3_MEDTR; Putative transcription factor C2H2 family
STRINGAES709301e-177(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13233192
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.12e-45zinc finger protein 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]