PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g065980.1
Common NameMTR_3g065980
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 548aa    MW: 60002.6 Da    PI: 4.7669
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g065980.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.42.2e-1401695401374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      lv++L++cAea+++++l+la+al++++s las +  +m+++a+yf++ALa+r+++         +p+et +++ se l++   f+e sP+lkf+
  Medtr3g065980.1 169 LVHTLMACAEAIQQKNLKLAEALVKHISLLASLQTGAMRKVASYFAQALARRIYG---------NPEETIDSSFSEILHM--HFYESSPYLKFA 251
                      689****************************************************.........7777776566666666..5*********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      h+taNqaIlea++g+ rvH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +v+++++d
  Medtr3g065980.1 252 HFTANQAILEAFAGAGRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQADNTDALQQVGWKLAQLAQTIGVQFEFRGFVCNSIAD 345
                      ********************************************************************************************** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak........ 274
                      l++++L+++pgEa+aVn+v++lh++l++++s+e+    vL++vk+++Pk+v++veqea+hn++ F++rf+eal+yys+lfdsle +        
  Medtr3g065980.1 346 LDPNMLEIRPGEAVAVNSVFELHTMLARPGSVEK----VLNTVKKINPKIVTIVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGSnsssnnsn 435
                      **********************************....*********************************************77767777766 PP

             GRAS 275 ...lpres....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvl 360
                                  +++  +++ +lg++i+nvva eg +r+erhetl +Wr+r+++aGF+pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+l
  Medtr3g065980.1 436 snsT---GlgspSQDLLMSEIYLGKQICNVVAYEGVDRVERHETLTQWRSRMGSAGFEPVHLGSNAFKQASTLLALFAgGDGYRVEENNGCLML 526
                      5552...0444788999999************************************************************************** PP

             GRAS 361 gWkdrpLvsvSaWr 374
                      gW++r+L+++SaW+
  Medtr3g065980.1 527 GWHTRSLIATSAWK 540
                      *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.0E-341487No hitNo description
PfamPF120414.2E-361480IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098567.892143519IPR005202Transcription factor GRAS
PfamPF035147.7E-138169540IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MWREEKETNG GGMDELLAAL GYKVRSSDMA DVAQKLEQLE MVMGSAQEEG INHLSSDTVH  60
YDPTDLYSWV QTMLTELNPD SSQINDPLAS LGSSSEILNN TFNDDSEYDL SAIPGMAAYP  120
PQEENTAAKR MKTWSEPESE PAVVMSPPPA VENTRPVVLV DTQETGVRLV HTLMACAEAI  180
QQKNLKLAEA LVKHISLLAS LQTGAMRKVA SYFAQALARR IYGNPEETID SSFSEILHMH  240
FYESSPYLKF AHFTANQAIL EAFAGAGRVH VIDFGLKQGM QWPALMQALA LRPGGPPTFR  300
LTGIGPPQAD NTDALQQVGW KLAQLAQTIG VQFEFRGFVC NSIADLDPNM LEIRPGEAVA  360
VNSVFELHTM LARPGSVEKV LNTVKKINPK IVTIVEQEAN HNGPVFVDRF TEALHYYSSL  420
FDSLEGSNSS SNNSNSNSTG LGSPSQDLLM SEIYLGKQIC NVVAYEGVDR VERHETLTQW  480
RSRMGSAGFE PVHLGSNAFK QASTLLALFA GGDGYRVEEN NGCLMLGWHT RSLIATSAWK  540
LPQNESK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-6716453913377Protein SCARECROW
5b3h_D3e-6716453913377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.42980.0glandular trichome| leaf| pod| root| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g065980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460591.20.0DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLA0A396IUP10.0A0A396IUP1_MEDTR; Putative transcription factor GRAS family
STRINGXP_004503135.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]