PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g067290.1
Common NameMTR_3g067290
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 223aa    MW: 25397.7 Da    PI: 10.4833
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g067290.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.15.9e-0888166791
             FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                      A+++GF +++++s+         +  +vC ++g ++  kkk   +++++ + ++gC  ++   ++k +++w ++ l+  HnH+++p
  Medtr3g067290.1  88 ANKAGFIIVTQRSNLI-----NPMFCLVCERSGAHKVPKKK--PKHSRTGSRKCGCLFMISGYQSKqTKEWGLNILNGVHNHAMMP 166
                      7788888887766554.....346789*********99998..888888999*******98766666***************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-588166IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MILLPRQLTV EEFKNRLQLT AEENLDIMVE NAKDVPRETK PNFVEFFGDV KPPKVEAKPN  60
INGASKYVDS GVLPLQAHEV DTWARRQANK AGFIIVTQRS NLINPMFCLV CERSGAHKVP  120
KKKPKHSRTG SRKCGCLFMI SGYQSKQTKE WGLNILNGVH NHAMMPALEG HILGGRLKED  180
DKKIVRDLTK SKMLPRHILI HLKNKRPHCM TNVKQMYNER QL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.248521e-163glandular trichome
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g067290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1955650.0AC195565.2 Medicago truncatula chromosome 2 BAC clone mth2-173e20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7J9G01e-165G7J9G0_MEDTR; FAR1 DNA-binding domain protein
STRINGAES709951e-166(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]