PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g067870.1
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19623.7 Da    PI: 9.7224
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g067870.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.16.3e-1585127345
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                       +++sn qvtfskRr g++KKA+  ++ C a  a+iifs   k
  Medtr3g067870.1  85 LSSESNLQVTFSKRRSGLFKKASKFCTRCRAYLALIIFSLGEK 127
                      6899**********************************97665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004047.9E-67797IPR002100Transcription factor, MADS-box
SMARTSM004327.1E-683134IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.98883123IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.29E-1285143IPR002100Transcription factor, MADS-box
PfamPF003197.4E-1587128IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-697112IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-6112133IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MEKQEVGKNN DEMQNSEGEN HPMVNVSIVF MSFKYQFIYR EKKEQLHVEF VKLVRQLDMK  60
QNWLSLFQRF FSMSSASCIR VSKALSSESN LQVTFSKRRS GLFKKASKFC TRCRAYLALI  120
IFSLGEKVQP QNNGIMQFIE AYCSAKVHKL NALLTHERCI GHREEPLE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g067870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT5730521e-44CT573052.2 Medicago truncatula chromosome 5 clone mth2-60f21, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072UZY94e-87A0A072UZY9_MEDTR; MADS-box transcription factor family protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-15AGAMOUS-like 62