PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g068095.1
Common NameMTR_3g068095
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 261aa    MW: 29588.2 Da    PI: 8.404
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g068095.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-055779123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ F++   L  H+++H
  Medtr3g068095.1 57 YSCHFCKREFRSAQALGGHMNVH 79
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.32E-65484No hitNo description
PfamPF139121.9E-55780IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0115784IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEESLNMMWM KRKQILHSHN EVVPSFGTIN NRSWEEKAFA EDAARILGGC IWPPRSYSCH  60
FCKREFRSAQ ALGGHMNVHR RDRAKLKQSL NHHNELELHS HHKNHFTTSR DNSSTWPSTT  120
YTQENCFQPN MSSYSSSIKW GNNHKESLDS EQKGLANAKE QIFKGYGCND YVETSLSMGQ  180
NNSMFGQKLQ TEDDSCGGDK GINYKRPKTA SISSSLPVLL KPCLNDRCLT FQSAEFVIGV  240
KPGIEDLDLE LRLGKLTQKV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-125279229superman protein
2l1o_A2e-125279229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17987RRDRAKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g068095.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460707.10.0probable transcriptional regulator RABBIT EARS
TrEMBLA0A072UZ720.0A0A072UZ72_MEDTR; Putative transcription factor C2H2 family
STRINGGLYMA11G34285.11e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-25zinc-finger protein 10
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]