PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g070780.1
Common NameMTR_3g070780
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-X1
Protein Properties Length: 876aa    MW: 97679.2 Da    PI: 8.4126
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g070780.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.31e-05190208120
         zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                      CG H C  lCH+GpCp+Cpq
  Medtr3g070780.1 190 CG-HYCLLLCHPGPCPSCPQ 208
                      **.****************8 PP
2zf-NF-X123.89.6e-08242260119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG H+C ++CH+G+CppC+
  Medtr3g070780.1 242 CGVHRCVEICHRGDCPPCR 260
                      ******************8 PP
3zf-NF-X116.81.5e-05402421120
         zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                      CGkH+C++ C+ G+CppC++
  Medtr3g070780.1 402 CGKHPCKRRCCDGDCPPCSE 421
                      ******************85 PP
4zf-NF-X121.93.9e-07423447119
         zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                      CG      +HkCq++CH+GpC pCp
  Medtr3g070780.1 423 CGrrlrcrNHKCQSPCHRGPCAPCP 447
                      777777779***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578507.06E-571149No hitNo description
PROSITE patternPS01359077143IPR019786Zinc finger, PHD-type, conserved site
CDDcd060087.08E-6178226No hitNo description
SMARTSM004380.01190208IPR000967Zinc finger, NF-X1-type
PfamPF014220.0024190207IPR000967Zinc finger, NF-X1-type
SMARTSM00438190216238IPR000967Zinc finger, NF-X1-type
CDDcd060083.59E-9232280No hitNo description
SMARTSM004389.5E-5242261IPR000967Zinc finger, NF-X1-type
PfamPF014223.5E-5242260IPR000967Zinc finger, NF-X1-type
CDDcd060086.18E-9285332No hitNo description
SMARTSM004380.025295314IPR000967Zinc finger, NF-X1-type
PfamPF014220.28295313IPR000967Zinc finger, NF-X1-type
CDDcd060082.75E-8339388No hitNo description
SMARTSM004380.3349369IPR000967Zinc finger, NF-X1-type
PfamPF014220.015349368IPR000967Zinc finger, NF-X1-type
CDDcd060082.04E-7392440No hitNo description
SMARTSM004380.015402421IPR000967Zinc finger, NF-X1-type
PfamPF014220.0044402420IPR000967Zinc finger, NF-X1-type
CDDcd060081.53E-10419467No hitNo description
PfamPF014223.2E-4423447IPR000967Zinc finger, NF-X1-type
SMARTSM004385.5E-4429448IPR000967Zinc finger, NF-X1-type
SMARTSM0043832486507IPR000967Zinc finger, NF-X1-type
PfamPF014224.8496506IPR000967Zinc finger, NF-X1-type
SMARTSM0043895515560IPR000967Zinc finger, NF-X1-type
PfamPF01422180515524IPR000967Zinc finger, NF-X1-type
SMARTSM0043814597629IPR000967Zinc finger, NF-X1-type
PfamPF014224.2597607IPR000967Zinc finger, NF-X1-type
CDDcd060082.04E-4639668No hitNo description
SMARTSM004380.093639657IPR000967Zinc finger, NF-X1-type
PfamPF014220.53640656IPR000967Zinc finger, NF-X1-type
SMARTSM0043811702723IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MAASHNHRPP PPQPLSDSDS DGGGSSTTSL LRHSDLSESI FKSYFNFSGH SSTNATSADL  60
SKIQSFLTSS SSGALSCLIC LERIKPSDPT WSCTSLCFAV FHLFCIQSWS RQASDLAASR  120
AVTRLSVSAE HAAETSLWNC PKCRVEYPKS LIPKIYFCFC GKLENPPSDD PWVLPHSCGE  180
VCGRSLKNDC GHYCLLLCHP GPCPSCPQLV KVSCFCGSHQ DVRRCGFKEF SCEARCEKKL  240
DCGVHRCVEI CHRGDCPPCR ARGVYRCQCG KVKEERECCE RVFQCSDPCE KKLSCGKHVC  300
EKGCHSGECG GCPLQGKRTC PCGKRVYEGM PCDAPLQVCG ATCEKTLPCG YHRCHERCHR  360
GQCMETCRIV VKKSCRCGSL RKDVPCYQDL TCERKCQTLR DCGKHPCKRR CCDGDCPPCS  420
EICGRRLRCR NHKCQSPCHR GPCAPCPIMV TIACACGETH FEVPCGTEMD QKPPKCRKQC  480
PIQPLCRHAS ISKPHKCHYG ACPPCRLPCA EEYQCGHACK LRCHGAKPPP KPEFTLKPKK  540
KKIIQQSESA PGTPCPPCPE LEWRPCVGQH IGAERMMVCS NKSQFSCDNL CGNPLPCSNH  600
YCTKTCHALE NRSSMNQLPR SEACEACSLS CQKERKPKCQ HHCPRRCHPG DCPPCKVLIK  660
RSCHCGAMVH AFECIYYNSL SAKDQETARS CGGPCHRKMP NCTHLCPETC HPGECRNPEK  720
CSKKVTVRCK CQTLKKEWLC QDVQAAHNRA GCNPSDVPKN QFGVGLIPCN SDCKSKVQVV  780
ESELQLRKSK VTEVKEQPDN EKSGPKRRKK RERVVESKEP TILQKMISRA KQLLLFIFFL  840
VILVAATHYG YKGLLWLNDW MNKVDEQRQR SSRIR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.174400.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g070780.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2357520.0AC235752.3 Medicago truncatula clone mth2-93d23, complete sequence.
GenBankCR3822790.0CR382279.1 M.truncatula DNA sequence from clone MTH2-15G18 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600910.20.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLG7JBA90.0G7JBA9_MEDTR; NF-X1-type zinc finger protein NFXL2
STRINGAES711610.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]