PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g070970.1
Common NameMTR_3g070970
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 263aa    MW: 29497.3 Da    PI: 8.4785
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g070970.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.9e-1375121354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+++E+rRRdriN+ +++Lr+l+Pk+      K++Ka+ L  +++ +k+L
  Medtr3g070970.1  75 KSHSQAEKRRRDRINTQLANLRKLIPKS-----DKMDKAALLGSVIDQVKDL 121
                      79*************************8.....7***********9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.93272121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1273125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.58E-975124No hitNo description
Gene3DG3DSA:4.10.280.106.8E-1475124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1075121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-1078127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2608.8E-4170231No hitNo description
CDDcd048731.49E-5170205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSMENYNDSS EWQHLSTNWS QYSNDHSQFP VTVPTQILPH NISDSSSGSF QYSEFQSWNL  60
PIEGSVEDRA ASASKSHSQA EKRRRDRINT QLANLRKLIP KSDKMDKAAL LGSVIDQVKD  120
LKRKAMDVSR VITVPTEIDE VSIDYNHVVE DETNTNKVNK FKDNIIIKAS VCCDDRPELF  180
SELIQVLKSL RLTTVKADIA SVGGRIKSIL VLCSKDSEEN VCINTLKQSL KSAVTKIASS  240
SMVSNCPTRS KRQRFFLPSH FV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.137170.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g070970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0525310.0BT052531.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-C-12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600927.20.0transcription factor bHLH51
TrEMBLG7JBT80.0G7JBT8_MEDTR; Transcription factor
STRINGAES711780.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.18e-56bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]