PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr3g071420.1

Common Name

MTR_3g071420

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

LBD

Protein Properties

Length: 186aa MW: 20570.6 Da PI: 7.7207

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr3g071420.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126	1.8e-39	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+l+r+C++dC +apyf +++ kkfa vhk+FGasnv+k+l ++pe++red+++sl+yeAear+rdPvyG++g i lq+++++l+++l Medtr3g071420.1 14 SCAACKLLKRRCTPDCLFAPYFHSNECKKFAKVHKVFGASNVSKILIEVPEKQREDTVNSLAYEAEARLRDPVYGCIGSIAMLQRKMMELQHDL 107 6********************************************************************************************* PP DUF260 95 allkee 100 a +ke+ Medtr3g071420.1 108 AIAKER 113 *99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.142	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-39	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MKGIKGYEPR SSSSCAACKL LKRRCTPDCL FAPYFHSNEC KKFAKVHKVF GASNVSKILI 60 EVPEKQREDT VNSLAYEAEA RLRDPVYGCI GSIAMLQRKM MELQHDLAIA KERLARCRAV 120 AAAATITTTT APSVIDSLHS DVTLPPFPEF STSDDLNDIF CHGSSSQFLG RNETVDDFNQ 180 IPYIF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-43	9	116	6	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-43	9	116	6	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr3g071420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR378661	0.0	CR378661.1 M.truncatula DNA sequence from clone XX-10B15, complete sequence.
GenBank	CR937029	0.0	CR937029.1 M.truncatula DNA sequence from clone MTH2-105B15 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003600955.1	1e-137	LOB domain-containing protein 21
Swissprot	Q9SRL8	1e-60	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	G7JBW6	1e-136	G7JBW6_MEDTR; Lateral organ boundaries (LOB) domain protein
STRING	AES71206	1e-136	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	1e-62	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	Medtr3g071420.1
Entrez Gene	11406765

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]