PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr3g071590.1

Common Name

MTR_3g071590

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

LBD

Protein Properties

Length: 160aa MW: 17933.6 Da PI: 7.8388

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr3g071590.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.5	5.5e-44	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +Ca+Ck+lrr+CakdC++apyfp+++pkkfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar++dPvyG+vg i+ lq+q+++l+ +l Medtr3g071590.1 8 PCASCKLLRRRCAKDCIFAPYFPSHDPKKFAIVHKVFGASNVSKMLQELPIQQRADAVSSLVYEANARVKDPVYGCVGAISYLQNQVSELQMQL 101 7********************************************************************************************* PP DUF260 95 allkee 100 a++++e Medtr3g071590.1 102 AVAQAE 107 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.719	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-43	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MGGNTTSPCA SCKLLRRRCA KDCIFAPYFP SHDPKKFAIV HKVFGASNVS KMLQELPIQQ 60 RADAVSSLVY EANARVKDPV YGCVGAISYL QNQVSELQMQ LAVAQAEILC IQMKHDDQPL 120 MQNQEIALDH KPYDLPQYFN FPSSSNVIHH DSFSRERIF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-47	4	109	7	112	LOB family transfactor Ramosa2.1
5ly0_B	6e-47	4	109	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr3g071590.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR378662	1e-179	CR378662.1 M.truncatula DNA sequence from clone MTH2-41N19 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003600972.1	1e-117	LOB domain-containing protein 12
Swissprot	Q8LBW3	1e-71	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	G7J2B8	1e-115	G7J2B8_MEDTR; Lateral organ boundaries (LOB) domain protein
STRING	AES71223	1e-116	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	6e-74	LBD family protein

Link Out ? help Back to Top
Phytozome	Medtr3g071590.1
Entrez Gene	11411277

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]