PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g072200.1
Common NameMTR_3g072200
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 548aa    MW: 62599.5 Da    PI: 9.9327
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g072200.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.67.4e-0771149790
             FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      A+++ F+v +++s +  rng   + ++vC ++g+ +  k+k   +++ + + ++gC  k++    + ++ w++t l+  HnHe++
  Medtr3g072200.1  71 ANRTEFTVIIRRSCEG-RNG---MLELVCERSGEYKLPKTK--VKHEATGSRKCGCLFKVRGYVVReNNAWKLTILNGVHNHEMV 149
                      6777888888887776.555...799*********999888..6777788888999888875555559***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080210.21435547IPR003323OTU domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MHQRTNTVEN ADDSGDRKPS GVDSVKVEAP MKVEASVKVE TSSVNSDVCK LRDNEVDTDK  60
DELLGWVRRQ ANRTEFTVII RRSCEGRNGM LELVCERSGE YKLPKTKVKH EATGSRKCGC  120
LFKVRGYVVR ENNAWKLTIL NGVHNHEMVR YAAGHLLTGR LMEDDKKIVH DLTDSSVKPK  180
NILTNLKKKR KESITNIKQV YNERHKFKKV KEYLSTSKGT KMSLCTPGWG GHMSRQAMNF  240
IFVEEARARK TLCIEKKTCG CVQRTSYGLP CACFIAMKIR HKKPIRLDEI HPHWHKLYMG  300
EEESNEDLFS LAEEWRGIQE HLERVPFQMK LEIKEGMRLL AFPETTMLSP PPKKVPIKGA  360
PKKIKTTRRI PSKWETIDSQ HPKSQSSPRK KASQPKRKGA RIDISPVPKP SLVSRNYDPS  420
NPMYYMPKFM RPYIEGIVDV IGDGDCGFKA IAERVGLTEE SHVMVRRALI KELKEHMNKY  480
IEVYASADRY KYILDGLHPP KNLSSFAPPD KWLTLLDMGH IVASCYNRPV VEMTTLDIGV  540
SETFFPT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g072200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1517250.0AC151725.26 Medicago truncatula clone mth2-164l16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7J2Y70.0G7J2Y7_MEDTR; FAR1 DNA-binding domain protein
STRINGAES712800.0(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]