PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g073560.1
Common NameMTR_3g073560
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 602aa    MW: 69402.9 Da    PI: 9.1513
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g073560.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.12.4e-106593533
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLee 33
                     k+ rr+++NReAA++sR+RKka++++Le 
  Medtr3g073560.1 65 KVLRRLAQNREAAKKSRERKKAYVKQLES 93
                     889************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.003358121IPR004827Basic-leucine zipper domain
PfamPF001706.2E-86593IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.65E-66695No hitNo description
Gene3DG3DSA:1.20.5.1705.2E-76893No hitNo description
PROSITE patternPS0003606883IPR004827Basic-leucine zipper domain
PfamPF141442.9E-25153226IPR025422Transcription factor TGA like domain
SuperFamilySSF465652.21E-21347477IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1104.3E-21404486IPR001623DnaJ domain
SMARTSM002718.2E-16409473IPR001623DnaJ domain
PROSITE profilePS5007617.178410481IPR001623DnaJ domain
CDDcd062571.45E-14410470IPR001623DnaJ domain
PfamPF002267.2E-18411478IPR001623DnaJ domain
PRINTSPR006253.3E-11412430IPR001623DnaJ domain
PRINTSPR006253.3E-11430445IPR001623DnaJ domain
PRINTSPR006253.3E-11453473IPR001623DnaJ domain
PROSITE patternPS006360458477IPR018253DnaJ domain, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MDIYEPFQQV SMWGDSFKVE GGLNSIASPM LLVNSNTTSM ENKSEYIPHE PREHSEAEQE  60
ITNNKVLRRL AQNREAAKKS RERKKAYVKQ LESSRLKLMQ LELEIGRARK QGISTGSALD  120
TSFMGSSETI NPGIVAFEIE YGNWVDENHR RNEELRNAFQ TNASEVQLRL VVQSVLNHYS  180
DLFRMKTDAA KADPLYLISG VWKPSVERLF LWIGGSRPSQ LLNLIVPQLE PLSDEQMFSI  240
KKLHLSSQQA EDALSQGLNK LQESLVQDMA FVPLNAANHG IQMAIAIDKF EGLEGFVIQA  300
DHLRQQTLIH MSRILSTHQA ARGLIALGEY FHRLRTICSL WTSRPFDSMR HQFRFRASFW  360
NPNCKPYLQS PWLYSTWLGS SGNSSRPMPQ FRLNQKRTVA KATNWDQQKT PYETLELEGD  420
ADDEQIKIAY RRLAKFYHPD VYDGRGILEE GETAEARFIK IQAAYELLID SERRKKYDMA  480
NQANPMKASQ AWMEWLMKKR KAFNQRGDMA IYAWAEQQQR ELNVRARQLS RSKVDPDEYR  540
KILAREKKAS AEHFSSTLKR HTLILQKRDI MRKKADEEMK KTIGHLLAAE GLELDDSDEE  600
L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.115290.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:8003690, ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269|PubMed:12897257}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g073560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1341100.0BT134110.1 Medicago truncatula clone JCVI-FLMt-15I22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024633716.10.0transcription factor TGA3 isoform X2
SwissprotQ392341e-120TGA3_ARATH; Transcription factor TGA3
TrEMBLA0A072UYM30.0A0A072UYM3_MEDTR; Transcription factor TGA7, putative
STRINGXP_004515651.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1021933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22070.11e-113TGA1A-related gene 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D
    The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7.
    PLoS ONE, 2013. 8(12): p. e82032
    [PMID:24324742]
  4. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  5. Fang H, et al.
    The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis.
    Plant J., 2017. 91(6): p. 1038-1050
    [PMID:28670772]
  6. Sarkar S, et al.
    Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta.
    Planta, 2018. 247(1): p. 181-199
    [PMID:28913593]