PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g075140.1
Common NameMTR_3g075140
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 251aa    MW: 28747.6 Da    PI: 7.3689
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g075140.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.11.6e-13761373499
                      SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++ led++g++W +++  +  +g++ ++kGW +F +a++L+ gD +vF  +++ +f   vk++++
  Medtr3g075140.1  76 QKINLEDSTGKRWAITV--SEVDGSFAFKKGWDDFSSAHKLEIGDLLVFNCINKYNF--DVKIYDQ 137
                      58***************..*******************************8876666..8888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.80145138IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-1656140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-1658140IPR015300DNA-binding pseudobarrel domain
CDDcd100173.86E-1075136No hitNo description
PfamPF023621.9E-1075136IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MYDISTFLYS TCEAILNILC PKIRKGYIQH FLHPRVFLFI LLPFRAPREN KNSAMVRNQQ  60
DLPSKLNPTM SLLVDQKINL EDSTGKRWAI TVSEVDGSFA FKKGWDDFSS AHKLEIGDLL  120
VFNCINKYNF DVKIYDQSMC ERIDFSDKRK RKKRSRCSSG SLDAGGTPNS VEVVSENVNV  180
DRSVKCPRTS EDTSYIRNHV YLNDAAIFNN DPMFEEVLGS GDTSYASKFG LLDRKDFFWS  240
QVQDSQVTES L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147153KRKRKKR
2148152RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g075140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024635817.11e-154B3 domain-containing protein Os01g0905400 isoform X1
RefseqXP_024635818.11e-154B3 domain-containing protein Os01g0905400 isoform X2
TrEMBLA0A072V0U10.0A0A072V0U1_MEDTR; B3 DNA-binding domain protein (Fragment)
STRINGXP_004501829.11e-50(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-08B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]