PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g077875.1
Common NameMTR_3g077875
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 290aa    MW: 32865.9 Da    PI: 10.6764
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g077875.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.16.7e-09104183790
             FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      A ++GF+++++ks++      +   t++C ++g+ ++ k++++ + + + + +++C  klk   ek +++w ++ +   HnH+la
  Medtr3g077875.1 104 AARAGFTISTDKSST-----IVSYMTMQCERSGEYKPPKTRKKLKFEGTGSRKCNCLFKLKCFFEKkTQEWWIAMFCGVHNHDLA 183
                      889999999887655.....49999************9999788888899999999999998777779***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-5104183IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MVENVAEDGV EVKPGKNKAT GVGVGSSEGK PTNDVKFKVK ILFQVEAHIV HNQAKPVPTG  60
NFEEKPKPVP TGVRVIQVNT GSFFTTNERW KDREELLGWI HRQAARAGFT ISTDKSSTIV  120
SYMTMQCERS GEYKPPKTRK KLKFEGTGSR KCNCLFKLKC FFEKKTQEWW IAMFCGVHNH  180
DLASNLSGQL LAGRLKGEEK QRVIDMTKSL AKPRNILTDL KERNKESVTL IKQVYNARAR  240
WRKGQREDKT ELQYLITSIT VSKLIQNLRN NSNLKTRSTM SSTRVFKSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236244ARARWRKGQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g077875.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4682980.0CU468298.5 M.truncatula DNA sequence from clone MTH2-161J15 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632657.15e-75uncharacterized protein LOC112419317
TrEMBLA0A072V0070.0A0A072V007_MEDTR; FAR1 DNA-binding domain protein
STRINGAES722251e-136(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1801122
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]