PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g082160.1
Common NameMTR_3g082160
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 354aa    MW: 39330.9 Da    PI: 6.8388
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g082160.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.2e-09292345146
                      TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqk 46 
                      r++WT+eE++ l+++v ++ ++     W++I +       k+Rt+ ++k++w+k
  Medtr3g082160.1 292 RLNWTAEEEKVLKEGVLKFATEdqniPWRKILEFGCcvfdKTRTPVDLKDKWRK 345
                      89******************************9888****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.51E-1067126IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.108.0E-1069125IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.63670120IPR019787Zinc finger, PHD-finger
SMARTSM002493.7E-872118IPR001965Zinc finger, PHD-type
PROSITE patternPS01359073117IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.294287347IPR017877Myb-like domain
SuperFamilySSF466894.79E-9290347IPR009057Homeodomain-like
SMARTSM007171.6E-4291349IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-9291347IPR009057Homeodomain-like
PfamPF002491.4E-5292345IPR001005SANT/Myb domain
CDDcd116604.47E-9295344No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MRKKSVVSGI RHRRSITPST ASPIPLLSTT NDDHNATVYN SNSDGDDNHH THTPFPDSVP  60
ETVPVDSLDD NICITCNKLG GELLVCSQTD CPVSVHVTCI GSEPKFDDSG NFFCPYCAYK  120
RALKKTRELR EKAVLAKKAL SSFLEKHQTV HKDKEEQPVE PEPETVQDHV NRNEPEANEP  180
EVDEPKVSHS EEESNNDKEN DEEKVSVSGS SVSETKDSDY EVSVAEKKVR ASVKRKAAPV  240
KKALLRERKN GGGGGGSGGG DDIDEEEVTS SRTSSLRKRV TKQNILTGKR KRLNWTAEEE  300
KVLKEGVLKF ATEDQNIPWR KILEFGCCVF DKTRTPVDLK DKWRKITSKQ GCK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276291RKRVTKQNILTGKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g082160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0120600.0CU012060.10 M.truncatula DNA sequence from clone MTH2-62K13 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601481.20.0uncharacterized protein LOC11429054
TrEMBLG7J8350.0G7J835_MEDTR; Myb-like DNA-binding domain protein
STRINGAES717320.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120552022
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]