PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g084720.1
Common NameMTR_3g084720
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 230aa    MW: 26066.4 Da    PI: 9.8839
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g084720.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-05134157123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y+C++C+k F ++  + +H ++ H
  Medtr3g084720.1 134 YPCSKCNKIFETSQKFANHVSSsH 157
                      99*****************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.349134162IPR007087Zinc finger, C2H2
PROSITE patternPS000280136157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MNNNRLFQWM HGYNTTLKIY THSSFDYDSS SSVGTNNFGS HAPGILKAME ILETQFGHLH  60
TSTSSSSSSI NINMNDDIII NNNKNNNMMM TMNTYVAASS HLDLHNDMRK KKKRNENIND  120
GRIHSLPHKK YGPYPCSKCN KIFETSQKFA NHVSSSHCKF ESEEDRKKRY ISRIRKRPRL  180
QIQKLNDGTT TFVPVIACGD KSHAYVNDDG HNMIALTPLP NGIKVKSEP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113RKKKKR
2172178RIRKRPR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00523DAPTransfer from AT5G22990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g084720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1474840.0AC147484.21 Medicago truncatula clone mth2-52b4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024633575.13e-96probable serine/threonine-protein kinase DDB_G0271402
TrEMBLG7JBB91e-170G7JBB9_MEDTR; Uncharacterized protein
STRINGAES719741e-123(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1674277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22990.13e-15C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]