PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g084750.1
Common NameMTR_3g084750
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 360aa    MW: 41585.7 Da    PI: 9.5966
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g084750.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-05121144123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++C  Cg+ F +++ L++H +  H
  Medtr3g084750.1 121 HVCRVCGRKFYTNEKLVNHFKQlH 144
                      79*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.99121149IPR007087Zinc finger, C2H2
PROSITE patternPS000280123144IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.40.50.10105.7E-8123145IPR029060PIN domain-like
CDDcd061674.74E-15138275No hitNo description
PfamPF019361.1E-8193276IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10105.7E-8196281IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MLSILKFRGI FYTIKATSFR HCHSWGHNRI FISDKNPNEK LCRVGLFWDL DNKPPNSIPP  60
YEVANKLRIA AASFGVVRHM VAYANSHTFS NVPHIVRERR KERELLYRLE DKGVIKRNEP  120
HVCRVCGRKF YTNEKLVNHF KQLHEREHAK RLNRIESARG SRKVKLVGQY AMKMEKYKKA  180
ASAVLTPKVG YGLADELKRA GFWVQTVLDR PQAADIALQK HMVDMMDHRR VECLVLVSDD  240
SDFVDVIKEA KLRCLKTVVI GDFSSDGVLK RTADTAFSWE EILMGKAKKE AVSVVENWKD  300
RDILKRLEWT YNPEVDKKKL NLDDVVPETS GDDDIDDDYK DDRGPWWKLD SDDNGVANR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.143190.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g084750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1474840.0AC147484.21 Medicago truncatula clone mth2-52b4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024635450.10.0uncharacterized protein LOC11429074
RefseqXP_024635451.10.0uncharacterized protein LOC11429074
RefseqXP_024635452.10.0uncharacterized protein LOC11429074
TrEMBLA0A072V0L10.0A0A072V0L1_MEDTR; C2H2 type zinc finger protein
STRINGAES719770.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-106C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]