PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g084980.1
Common NameMTR_3g084980
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 27817.6 Da    PI: 8.4507
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g084980.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.51.3e-31959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  Medtr3g084980.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCS 59
                     79***********************************************96 PP
2K-box98.31.1e-3284174999
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       +ea + s+qqe+ kLk+++e+Lqr+qR+l+GedL++Ls k+L+ Le+qL++slk+iRs++++++l+q+ +lq+ke+ l e+n+aLr+++e
  Medtr3g084980.1  84 SKEALELSSQQEYLKLKARYESLQRTQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRME 174
                      455556689******************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.487161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-34288IPR002100Transcription factor, MADS-box
CDDcd002652.89E-45276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-33323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-333859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.97489179IPR002487Transcription factor, K-box
PfamPF014865.4E-2691173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0048481Biological Processplant ovule development
GO:0048833Biological Processspecification of floral organ number
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFSN RGKLYEFCST  60
SSMLKTLERY QKCNYGAPEA NAHSKEALEL SSQQEYLKLK ARYESLQRTQ RNLMGEDLGP  120
LSSKDLETLE RQLDSSLKQI RSTRTQFMLD QLGDLQRKEH LLCEANRALR QRMEGYQINS  180
LQLNLSAEDM GYGRHHPGQN QGDHDVFQPI ECEPTLQIGY QADPGSVVVT AGPSMNNYMG  240
GWLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A5e-45751731101Developmental protein SEPALLATA 3
4ox0_B5e-45751731101Developmental protein SEPALLATA 3
4ox0_C5e-45751731101Developmental protein SEPALLATA 3
4ox0_D5e-45751731101Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During seed development, highest expression is found in the seed coat of young seeds. Expression decreases steadily during further seed development but is detectable until desiccation begins. {ECO:0000269|PubMed:9869431}.
UniprotTISSUE SPECIFICITY: Expressed abundantly in the seed coat and to lesser extent in young buds, carpels, petals, and stamen. {ECO:0000269|PubMed:9869431}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000269|PubMed:9869431}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00605ChIP-seqTransfer from AT1G24260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g084980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2233180.0AJ223318.1 Pisum sativum mRNA for MADS-box transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601749.10.0MADS-box transcription factor 1 isoform X2
SwissprotO658741e-163MTF1_PEA; MADS-box transcription factor 1
TrEMBLG7JBE50.0G7JBE5_MEDTR; MADS-box transcription factor
STRINGAES720000.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-125MIKC_MADS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Buchner P,Boutin JP
    A MADS box transcription factor of the AP1/AGL9 subfamily is also expressed in the seed coat of pea (Pisum sativum) during development.
    Plant Mol. Biol., 1998. 38(6): p. 1253-5
    [PMID:9869431]