PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g085430.1
Common NameMTR_3g085430, NF-YC9
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YC
Protein Properties Length: 174aa    MW: 19393.3 Da    PI: 5.4935
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g085430.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC49.68.5e-16251091397
            NF-YC  13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 
                      +  f + e+P +r+kki+  d+dvk++s+ea  l+s++ elf+  l+ +s   a e+kr+t+k   +  av+r   i dfl+d  p
  Medtr3g085430.1  25 TLSF-EPEFPKSRVKKIITLDKDVKRVSSEALFLVSRSTELFLQLLAEKSAEVAIEKKRKTVKLEHMRIAVKRNRpISDFLLDSLP 109
                      3444.568***************************************************************9875489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.59E-172997IPR009072Histone-fold
PfamPF008082.7E-183194IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.6E-1832109IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MILYDKRNEL GIVIATVMGE EEEKTLSFEP EFPKSRVKKI ITLDKDVKRV SSEALFLVSR  60
STELFLQLLA EKSAEVAIEK KRKTVKLEHM RIAVKRNRPI SDFLLDSLPV PSETVKSDKP  120
AAVVDRPKSV SVGTRRIDQI FRKSGGDVEA QAQAQAPAPE PEPEPEPEPM EEA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.33040.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g085430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1424500.0BT142450.1 Medicago truncatula clone JCVI-FLMt-5P5 unknown mRNA.
GenBankCT7371800.0CT737180.5 M.truncatula DNA sequence from clone MTH2-117L19 on chromosome 3, complete sequence.
GenBankJQ9183010.0JQ918301.1 Medicago truncatula nuclear transcription factor Y subunit C9 (NF-YC9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601792.11e-119DNA polymerase epsilon subunit C
TrEMBLG7JC001e-118G7JC00_MEDTR; Nuclear transcription factor Y protein
STRINGAES720431e-119(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-42nuclear factor Y, subunit C13
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]