PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g086100.2
Common NameMTR_3g086100
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 500aa    MW: 56438.3 Da    PI: 6.0964
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g086100.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.91.1e-23128181155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ L++e+v+SHLQkYRl
  Medtr3g086100.2 128 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLSRENVASHLQKYRL 181
                      68*******************.9*******************************8 PP
2Response_reg32.16.1e-1215653109
                      CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
     Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                      mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga d+l Kp+ ++el++
  Medtr3g086100.2   1 MPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 56 
                      9************6644.8***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.0E-20182No hitNo description
SuperFamilySSF521722.56E-15174IPR011006CheY-like superfamily
CDDcd001563.05E-12162No hitNo description
PROSITE profilePS5011023.653162IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.8E-9157IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.603.7E-27125186IPR009057Homeodomain-like
SuperFamilySSF466896.81E-17126185IPR009057Homeodomain-like
TIGRFAMsTIGR015578.3E-21128181IPR006447Myb domain, plants
PfamPF002492.5E-7130180IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MPDMDGFKLL EHVGLEMDLP VIMMSVDGET SRVMKGVQHG ACDYLLKPIR MKELRNIWQH  60
VFRKRIHEVR EFENFESFES MHLMRNGSEM SEEGNLFALE DMTSTKKRKD VDSRHDDKEF  120
LDSSSSKKAR VVWSVDLHQK FVKAVNQIGF DKVGPKKILD LMNVPWLSRE NVASHLQKYR  180
LYLSRLQKDN EQKSSSSGMK HSDLPSKDVG NFGFPNSANK QQNDASIDKY NYSEGSLQHQ  240
NIETKSHEGN PKGIVPHSTA AEKARALTGN ITDATDTALN KPFAPLESER KRGAFDCNMS  300
TPYSWTEIPK TQLKKEQKSV VHLEDKFNLL PLNGKQHNIQ VDQSQSIASI SSTPSITEQD  360
VAACVETKPT FSDYKKDYTS SVSSIRSSVD TFPFQPGSLM MNDQPTQPIS TTNFGLKTQT  420
SNLSCISDLE SYQRNLLLGG EAASAPLDED LYFYWHNMNF GQQNIGMSEY YDPGLLIEVP  480
NHLYDSADYS VIDQGLFIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-17124186163ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.82340.0pod| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g086100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1405050.0BT140505.1 Medicago truncatula clone JCVI-FLMt-22H12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024633860.10.0two-component response regulator ORR26 isoform X2
TrEMBLA0A072V1N80.0A0A072V1N8_MEDTR; Two-component response regulator ARR2-like protein
STRINGAES721000.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.12e-81response regulator 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]