PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g087440.1
Common NameMTR_3g087440
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 236aa    MW: 26679.8 Da    PI: 10.3429
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g087440.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.11.5e-09104184791
             FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                      A ++GF+++++ks++      +   t++C ++g+ ++ k++++ + + + + +++C  +lk   ek +++w ++ l   HnH+lap
  Medtr3g087440.1 104 AGRAGFTISIDKSSTI-----VPYMTMQCERSGEYKPPKTRKKPKLEGTGSRKCNCLFRLKCFFEKkTQEWWIAMLCRVHNHDLAP 184
                      8899*****9986665.....8999*************999888889999999999999998777779***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.8E-6104184IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVENVAEDGV EAKPGKNKAF GVGVGSSEGK PTNDVKFKVK IPFQVEAHIV HNQAKSVPTG  60
NFEDKPKLVP IGVRVIQVNT WSFFTTNERW KDREELLGWV RRQAGRAGFT ISIDKSSTIV  120
PYMTMQCERS GEYKPPKTRK KPKLEGTGSR KCNCLFRLKC FFEKKTQEWW IAMLCRVHNH  180
DLAPNLSGHL LAGRLLGEEK QRVTDMTNSL AKPRNILMDL KEKKQRNCDT HQASV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g087440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1253890.0AC125389.33 Medicago truncatula clone mth2-12a18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7J3U01e-175G7J3U0_MEDTR; FAR1 DNA-binding domain protein
STRINGAES722251e-176(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1801122
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]