PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g088515.1
Common NameMTR_3g088515
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 249aa    MW: 29290.3 Da    PI: 4.8501
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g088515.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3469.5e-1522111196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+         r+ +p  f++ + +k++  k  +l+d +g  W vk   r  +++ ++ +GWk F ++n L+++Df+vF++++++ f  ++
  Medtr3g088515.1  22 FFKVF--LIEKHYERMLIPIAFVKLMLSKQRVLKYFILRDHRGTDWHVKA--RSIGRKLYFDDGWKLFREENSLEDNDFLVFRHIENNVF--KF 109
                      56666..334445689*******888556667789***************..999999***************************99999..55 PP

                      EE CS
               B3  95 kv 96 
                      k+
  Medtr3g088515.1 110 KI 111
                      54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-1720113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-1620114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.16720115IPR003340B3 DNA binding domain
CDDcd100174.98E-1520112No hitNo description
SMARTSM010191.5E-922115IPR003340B3 DNA binding domain
PfamPF023629.2E-1322111IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MPSIHSKDNQ ITTNTAKLFP DFFKVFLIEK HYERMLIPIA FVKLMLSKQR VLKYFILRDH  60
RGTDWHVKAR SIGRKLYFDD GWKLFREENS LEDNDFLVFR HIENNVFKFK IYELSSMCKK  120
MKMMMMTNDD YTMVEEEEEE KDEGDGDGDD EDDGDADDDV HIIMKEKRIK ELTRESVEAV  180
NINIVEPAKH LYIYSRVNIY LMIDCGLGSI GSSSAAPKHE DDEIDVEMYI QPGNPYFYAK  240
HYRPNELV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g088515.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024635040.11e-85B3 domain-containing protein REM20
TrEMBLA0A072V0X20.0A0A072V0X2_MEDTR; B3 DNA-binding domain protein
STRINGXP_004497762.19e-62(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128521124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.12e-11B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]