PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g088615.1
Common NameMTR_3g088615
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MIKC_MADS
Protein Properties Length: 182aa    MW: 20855.9 Da    PI: 9.3563
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g088615.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.97.3e-30959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien+snrqvt+skR+ngilKKA+E+SvLCda+v++i+f+ +gk++ey+s
  Medtr3g088615.1  9 KRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLILFGASGKMHEYIS 59
                     79***********************************************86 PP
2K-box86.55.5e-2971168198
            K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                      yq++sgk l++ak+e+l++e++++kke++++q  +Rhl+Ged++sL++keL+ Le+ Le++l+ +R+kK+e+ ++  ++ +  e+e++e n  L
  Medtr3g088615.1  71 YQRASGKTLWDAKHENLSNEIDRIKKENDSMQIDLRHLKGEDITSLNYKELMALEESLENGLTGVRDKKMEVHRMFKRNGKILEDENKELNFLL 164
                      78999***************************************************************************************99 PP

            K-box  95 rkkl 98 
                      ++ +
  Medtr3g088615.1 165 QQHM 168
                      9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.651161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-36296IPR002100Transcription factor, MADS-box
CDDcd002652.34E-39280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-28323IPR002100Transcription factor, MADS-box
PfamPF003196.0E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-2082161IPR002487Transcription factor, K-box
PROSITE profilePS5129714.4984170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRKNGILK KAKEISVLCD AQVSLILFGA SGKMHEYISP  60
STTLIDILDR YQRASGKTLW DAKHENLSNE IDRIKKENDS MQIDLRHLKG EDITSLNYKE  120
LMALEESLEN GLTGVRDKKM EVHRMFKRNG KILEDENKEL NFLLQQHMAL EGVGNMHGQW  180
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-18191183MEF2 CHIMERA
6bz1_B1e-18191183MEF2 CHIMERA
6bz1_C1e-18191183MEF2 CHIMERA
6bz1_D1e-18191183MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g088615.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1434830.0BT143483.1 Medicago truncatula clone JCVI-FLMt-11O19 unknown mRNA.
GenBankFJ4034680.0FJ403468.1 Medicago truncatula PISTILLATA mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461314.21e-131floral homeotic protein PMADS 2
SwissprotQ0HA251e-91MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A396IYI81e-129A0A396IYI8_MEDTR; Putative transcription factor MADS-MIKC family
STRINGXP_004502537.11e-125(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.13e-76MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]