PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g089055.1
Common NameMTR_3g089055
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 566aa    MW: 63676.5 Da    PI: 4.698
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g089055.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS443.91.1e-1351965652374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL+ecA+a+s+g+ e+a++++++l+ ++s +g+p qR+aay++e+Laarla+s++++y+al+++e +   ss++laa+++++ev+P++kf++
  Medtr3g089055.1 196 KQLLYECATAISEGNEEEASSMINNLRRIVSIQGEPSQRIAAYMVEGLAARLAESGKSIYRALKCKEPP---SSDRLAAMQILFEVCPCFKFGF 286
                      589*****************************************************************9...9********************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      ++aN+aI eav+ e+++HiiDfdi+qG Q+++L+q+LasR+ +p ++R+Tg+++pes+  s   l+ +g+rL+++Ae+lg++fef++ v++r++
  Medtr3g089055.1 287 IAANNAITEAVKDETKIHIIDFDINQGSQYITLIQTLASRSCKPSHVRLTGIDDPESVqrSIGGLKIIGQRLEQLAETLGLSFEFRA-VSSRTS 379
                      ********************************************************9988899************************.7***** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                       ++ ++L++++gEal+Vn+++qlh+++desvs+ +erd++L+lvksl+Pk+v+vveq++++n+++Fl+rf+ea +yysa+f+sl+ +lpres++
  Medtr3g089055.1 380 IVTSSMLNCRRGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTAPFLQRFVEAYNYYSAVFESLDFTLPRESQD 473
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r++vEr++l+r+ivn vaceg++r+er e ++kWr+r+++aGF++ p+s+++ ++++  ++ + ++ y+++ee+g+l +gW+d++L+++ aWr
  Medtr3g089055.1 474 RMNVERQCLARDIVNTVACEGEDRIERYEVAGKWRARMTMAGFSSSPMSTNVSDEIQKQVKLYCDR-YKIKEEKGALHFGWEDKNLIVAAAWR 565
                      ***************************************************************966.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.745169546IPR005202Transcription factor GRAS
PfamPF035143.7E-133196565IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MSLIGSSELP PASHKNAKLY SLKEIDINPD LSSQITYSDK HRSMYMTDAY SSESYEKYFH  60
DSNTEELIEP SSSNVSTSFM PTRQRGADQS SFGSDLIMEN RSMDSIEVDG VMRSKLEALE  120
RALLDDSDIE EEEEYGNSQT MEIDPNIIDW ADPDPIQNML LFHDHDSPKE YSSPDSNISS  180
ISSTTKEITK ISRTPKQLLY ECATAISEGN EEEASSMINN LRRIVSIQGE PSQRIAAYMV  240
EGLAARLAES GKSIYRALKC KEPPSSDRLA AMQILFEVCP CFKFGFIAAN NAITEAVKDE  300
TKIHIIDFDI NQGSQYITLI QTLASRSCKP SHVRLTGIDD PESVQRSIGG LKIIGQRLEQ  360
LAETLGLSFE FRAVSSRTSI VTSSMLNCRR GEALVVNFAF QLHHMPDESV STVNERDQLL  420
RLVKSLNPKL VTVVEQDVNT NTAPFLQRFV EAYNYYSAVF ESLDFTLPRE SQDRMNVERQ  480
CLARDIVNTV ACEGEDRIER YEVAGKWRAR MTMAGFSSSP MSTNVSDEIQ KQVKLYCDRY  540
KIKEEKGALH FGWEDKNLIV AAAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6820156425378Protein SCARECROW
5b3h_A4e-6820156424377Protein SCARECROW
5b3h_D4e-6820156424377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g089055.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461369.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A072V0830.0A0A072V083_MEDTR; GRAS family transcription factor
STRINGGLYMA06G12701.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]