PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g089055.2
Common NameMTR_3g089055
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 571aa    MW: 64226.1 Da    PI: 4.669
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g089055.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS443.91.1e-1352015702374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL+ecA+a+s+g+ e+a++++++l+ ++s +g+p qR+aay++e+Laarla+s++++y+al+++e +   ss++laa+++++ev+P++kf++
  Medtr3g089055.2 201 KQLLYECATAISEGNEEEASSMINNLRRIVSIQGEPSQRIAAYMVEGLAARLAESGKSIYRALKCKEPP---SSDRLAAMQILFEVCPCFKFGF 291
                      589*****************************************************************9...9********************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      ++aN+aI eav+ e+++HiiDfdi+qG Q+++L+q+LasR+ +p ++R+Tg+++pes+  s   l+ +g+rL+++Ae+lg++fef++ v++r++
  Medtr3g089055.2 292 IAANNAITEAVKDETKIHIIDFDINQGSQYITLIQTLASRSCKPSHVRLTGIDDPESVqrSIGGLKIIGQRLEQLAETLGLSFEFRA-VSSRTS 384
                      ********************************************************9988899************************.7***** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                       ++ ++L++++gEal+Vn+++qlh+++desvs+ +erd++L+lvksl+Pk+v+vveq++++n+++Fl+rf+ea +yysa+f+sl+ +lpres++
  Medtr3g089055.2 385 IVTSSMLNCRRGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTAPFLQRFVEAYNYYSAVFESLDFTLPRESQD 478
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r++vEr++l+r+ivn vaceg++r+er e ++kWr+r+++aGF++ p+s+++ ++++  ++ + ++ y+++ee+g+l +gW+d++L+++ aWr
  Medtr3g089055.2 479 RMNVERQCLARDIVNTVACEGEDRIERYEVAGKWRARMTMAGFSSSPMSTNVSDEIQKQVKLYCDR-YKIKEEKGALHFGWEDKNLIVAAAWR 570
                      ***************************************************************966.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.745174551IPR005202Transcription factor GRAS
PfamPF035143.8E-133201570IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MTDTTMSLIG SSELPPASHK NAKLYSLKEI DINPDLSSQI TYSDKHRSMY MTDAYSSESY  60
EKYFHDSNTE ELIEPSSSNV STSFMPTRQR GADQSSFGSD LIMENRSMDS IEVDGVMRSK  120
LEALERALLD DSDIEEEEEY GNSQTMEIDP NIIDWADPDP IQNMLLFHDH DSPKEYSSPD  180
SNISSISSTT KEITKISRTP KQLLYECATA ISEGNEEEAS SMINNLRRIV SIQGEPSQRI  240
AAYMVEGLAA RLAESGKSIY RALKCKEPPS SDRLAAMQIL FEVCPCFKFG FIAANNAITE  300
AVKDETKIHI IDFDINQGSQ YITLIQTLAS RSCKPSHVRL TGIDDPESVQ RSIGGLKIIG  360
QRLEQLAETL GLSFEFRAVS SRTSIVTSSM LNCRRGEALV VNFAFQLHHM PDESVSTVNE  420
RDQLLRLVKS LNPKLVTVVE QDVNTNTAPF LQRFVEAYNY YSAVFESLDF TLPRESQDRM  480
NVERQCLARD IVNTVACEGE DRIERYEVAG KWRARMTMAG FSSSPMSTNV SDEIQKQVKL  540
YCDRYKIKEE KGALHFGWED KNLIVAAAWR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6820656925378Protein SCARECROW
5b3h_A4e-6820656924377Protein SCARECROW
5b3h_D4e-6820656924377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g089055.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461369.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A072V0830.0A0A072V083_MEDTR; GRAS family transcription factor
STRINGGLYMA06G12701.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]