PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g092150.1
Common NameMTR_3g092150
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 246aa    MW: 29045.2 Da    PI: 5.2031
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g092150.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-193991456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +++f++eq++ Le  Fe+++++  +++ +LA+ lgL+ rqV +WFqNrRa++k
  Medtr3g092150.1 39 KRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWK 91
                     568*************************************************9 PP
2HD-ZIP_I/II1222.9e-3937129193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      e+krr+s+eq+++LE  Fe+e+kLep++K++lar+Lglqprqva+WFqnrRAR+k+k++E++y++Lk++yd+l+++ + L++e+e+L++e+++
  Medtr3g092150.1  37 ENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASKFQCLKEEKESLQSEVQK 129
                      58***************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.84E-182293IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-192492IPR009057Homeodomain-like
PROSITE profilePS5007117.5243393IPR001356Homeobox domain
SMARTSM003893.3E-163697IPR001356Homeobox domain
PfamPF000464.1E-173991IPR001356Homeobox domain
CDDcd000861.58E-134094No hitNo description
PRINTSPR000318.7E-66473IPR000047Helix-turn-helix motif
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PRINTSPR000318.7E-67389IPR000047Helix-turn-helix motif
PfamPF021831.8E-1193132IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MMEEEENIHE GFKGKNVESM SCLETPQNSK KKNKKIENKR RFSDEQIRSL ECIFESESKL  60
EPRKKMQLAR DLGLQPRQVA IWFQNRRARW KSKRIEQEYR KLKDEYDNLA SKFQCLKEEK  120
ESLQSEVQKL SYMVETSHDG GREAKENSTE DGGSRNGYNN SRFEETKQRF SNEGLEDKVV  180
IYSDDQNERS TTWTEKVEDR GNQLLRNDDH AEIPLTTTLE KWYNVDPCGM LDQSCNSSQW  240
LDFWT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g092150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3022480.0CU302248.6 M.truncatula DNA sequence from clone MTH2-33P23 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602321.20.0homeobox-leucine zipper protein ATHB-12
TrEMBLG7J8740.0G7J874_MEDTR; Homeobox associated leucine zipper protein
STRINGAES725721e-180(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.18e-45homeobox 7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]