PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr3g094020.1

Common Name

MTR_3g094020

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bZIP

Protein Properties

Length: 312aa MW: 34644.4 Da PI: 6.1844

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr3g094020.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.8	6.5e-10	110	168	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK ++ eLe+k+ +L++e ++L +l+ + l se+ Medtr3g094020.1 110 KRAKRILANRQSAARSKERKACYVVELERKIHTLQTEATTLSAQLNLFQRDTTGLSSEN 168 9*******************************************999887777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.8E-15	106	170	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.14	108	171	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.14E-10	110	164	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.4E-10	110	165	No hit	No description
Pfam	PF00170	2.0E-7	110	168	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.02E-21	111	160	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MSSFPFHRRS QSEVHFRIPD DFDLEMDPFD FDASPLQFQD PPPPQHDDLL SSYIDSDNSG 60 SKLNSPTAAN AGHRRSNSAD TSSSLLSEGI ESKKAMSPDK LAQLWTVDPK RAKRILANRQ 120 SAARSKERKA CYVVELERKI HTLQTEATTL SAQLNLFQRD TTGLSSENTE LKLRLQTMEQ 180 QAKLCDALNE ALKNEVDRLK LATGEVPTHA DTYGLGMHQL SYSQASSFMH QPQHGSNELR 240 AMQMQHFHSL SSNGSNPHQP QFDLPTSYDL SEMLSSDSIG QFQGLDIGNR VSHVLMPDGP 300 SVSVNKTNNA F*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269\|PubMed:27896439}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr3g094020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013461513.1	0.0	bZIP transcription factor 18
Swissprot	O22873	2e-83	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A072V2G2	0.0	A0A072V2G2_MEDTR; BZIP transcription factor
STRING	XP_004502831.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-79	bZIP family protein

Link Out ? help Back to Top
Phytozome	Medtr3g094020.1
Entrez Gene	25489831

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]