PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr3g094690.1

Common Name

MTR_3g094690

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

LBD

Protein Properties

Length: 238aa MW: 26174.8 Da PI: 8.5836

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr3g094690.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.3	8.5e-41	47	146	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++ e r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael Medtr3g094690.1 47 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVAECSRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAEL 140 7********************************************************************************************* PP DUF260 95 allkee 100 +ll+ e Medtr3g094690.1 141 NLLRGE 146 *99866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.953	46	147	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-40	47	143	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MSRERERFDE IGKKIKREGD HDVSNSSNQM GRRHMLGPPG TLNTITPCAA CKLLRRRCAQ 60 ECPFSPYFSP HEPQKFASVH KVFGASNVSK MLMEVAECSR ADAANSLVYE ANVRLRDPVY 120 GCMGAISALQ QQVQSLQAEL NLLRGEILKY KLREAANINM NMNMNMNNMI PSSHQLAMLP 180 SNSSVAVSIA APPPPPPPLP PPPISSTTSN SSSSIYFQQR DPNYNTISSD DNISYFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-43	39	158	3	122	LOB family transfactor Ramosa2.1
5ly0_B	7e-43	39	158	3	122	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr3g094690.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	2e-55	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003602464.1	1e-176	LOB domain-containing protein 15 isoform X1
Swissprot	Q8L5T5	9e-82	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	G7J9S3	1e-175	G7J9S3_MEDTR; Fission regulator
STRING	AES72715	1e-175	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	4e-80	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Medtr3g094690.1
Entrez Gene	11418509

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]