PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr3g094690.2

Common Name

MTR_3g094690

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

LBD

Protein Properties

Length: 237aa MW: 26045.7 Da PI: 8.7976

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr3g094690.2	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.9	8.3e-39	47	145	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l e r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael Medtr3g094690.2 47 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMV-AECSRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAEL 139 7******************************************987.8999*************************************** PP DUF260 95 allkee 100 +ll+ e Medtr3g094690.2 140 NLLRGE 145 *99866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.857	46	146	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-38	47	142	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MSRERERFDE IGKKIKREGD HDVSNSSNQM GRRHMLGPPG TLNTITPCAA CKLLRRRCAQ 60 ECPFSPYFSP HEPQKFASVH KVFGASNVSK MLMVAECSRA DAANSLVYEA NVRLRDPVYG 120 CMGAISALQQ QVQSLQAELN LLRGEILKYK LREAANINMN MNMNMNNMIP SSHQLAMLPS 180 NSSVAVSIAA PPPPPPPLPP PPISSTTSNS SSSIYFQQRD PNYNTISSDD NISYFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-40	39	157	3	122	LOB family transfactor Ramosa2.1
5ly0_B	2e-40	39	157	3	122	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr3g094690.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	2e-56	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013461540.1	1e-175	LOB domain-containing protein 15 isoform X2
Swissprot	Q8L5T5	3e-79	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A072VBK8	1e-174	A0A072VBK8_MEDTR; Fission regulator
STRING	AES72715	1e-140	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-77	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Medtr3g094690.2
Entrez Gene	11418509

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]