PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g095040.1
Common NameMTR_3g095040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 206aa    MW: 23398.6 Da    PI: 5.6872
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g095040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.51.3e-28117175159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +dDgy+WrKYG+K+vk+s++pr+YY+C+ ++C vkk+ver++ed ++v + Yeg Hnhe
  Medtr3g095040.1 117 MDDGYKWRKYGKKSVKNSPYPRNYYKCSGERCGVKKRVERDREDSSYVLTSYEGVHNHE 175
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-30104177IPR003657WRKY domain
SuperFamilySSF1182903.53E-26109177IPR003657WRKY domain
PROSITE profilePS5081129.298112177IPR003657WRKY domain
SMARTSM007741.4E-30117176IPR003657WRKY domain
PfamPF031063.4E-22118175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDMYFGNPNS NPYHNNNISP PPPFSSDFIN LSDYLVLDDE HQECWSQSTG TESSDNKAPS  60
TTIDINVINQ GLICDEIETS TNNNNNMMKR KSGVMKENTV DVSPRVTFRT RSQLEIMDDG  120
YKWRKYGKKS VKNSPYPRNY YKCSGERCGV KKRVERDRED SSYVLTSYEG VHNHESPCNS  180
YCTPVSLVYS NEWPQQNPSA TSSSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-24108178878Probable WRKY transcription factor 4
2ayd_A6e-24105177274WRKY transcription factor 1
2lex_A7e-24108178878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.68371e-114root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g095040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1378271e-145AC137827.21 Medicago truncatula clone mth2-20g23, complete sequence.
GenBankCU0624961e-145CU062496.5 M.truncatula DNA sequence from clone MTH2-80K13 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602498.21e-151probable WRKY transcription factor 51
TrEMBLG7JAB71e-150G7JAB7_MEDTR; Putative transcription factor WRKY family
STRINGAES727492e-96(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.15e-39WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]