PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g095080.3
Common NameMTR_3g095080
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 194aa    MW: 21784.6 Da    PI: 9.7709
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g095080.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.93e-11167189123
                      ---SS-EEEEEEE--TT-SS-EE CS
             WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                      ldDgy+WrKYGqK+vk++++pr 
  Medtr3g095080.3 167 LDDGYKWRKYGQKVVKNTQHPRY 189
                      59*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-13152190IPR003657WRKY domain
SuperFamilySSF1182902.75E-10159190IPR003657WRKY domain
PROSITE profilePS5081113.253162193IPR003657WRKY domain
SMARTSM007740.0072167193IPR003657WRKY domain
PfamPF031061.2E-7168190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSTTNIVNHH SLFDQEQDHE IPMQMGFNIP FPPNMTLPPL DNCHHQSLKG ISAITPSSLS  60
PEAANFAETL LATAVQKTRE FDDHLTSSFG GGGQLLSLNR SKVNSWAWGE VTGSLIGKRS  120
SGGDDQHHHH HNQQLGVSAI KMKKMKGRRK VREPRFCFKT MSDVDVLDDG YKWRKYGQKV  180
VKNTQHPRYF LSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g095080.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1490960.0BT149096.1 Medicago truncatula clone JCVI-FLMt-12F22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602502.11e-141probable WRKY transcription factor 13
SwissprotQ9SVB72e-28WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A072V2J01e-144A0A072V2J0_MEDTR; WRKY family transcription factor
STRINGAES727531e-140(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.19e-22WRKY DNA-binding protein 13
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]