PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g096140.5
Common NameMTR_3g096140
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 279aa    MW: 31216.2 Da    PI: 6.1714
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g096140.5genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.89.4e-4981352129
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       pGfrFhPtd elv+++Lk+k+ g+k+++ +vi+e+diyk+ PwdLp k  +k+++ +wyfF++  kky tg r nrat+ gyWk+tgkd+++ 
  Medtr3g096140.5   8 IPGFRFHPTDVELVMYFLKRKILGRKFPF-NVIDELDIYKYAPWDLPeKsLLKSGDLQWYFFTPVGKKYCTGGRMNRATEVGYWKTTGKDRSIE 100
                      79***************************.99**************95346677888************************************* PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      + ++++vg+ +tLvf++g+apkg +tdWvmheyrle
  Medtr3g096140.5 101 H-RNQVVGMIRTLVFHTGKAPKGDRTDWVMHEYRLE 135
                      9.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-587157IPR003441NAC domain
PROSITE profilePS5100554.2017157IPR003441NAC domain
PfamPF023653.0E-259134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAETKLMIPG FRFHPTDVEL VMYFLKRKIL GRKFPFNVID ELDIYKYAPW DLPEKSLLKS  60
GDLQWYFFTP VGKKYCTGGR MNRATEVGYW KTTGKDRSIE HRNQVVGMIR TLVFHTGKAP  120
KGDRTDWVMH EYRLENKDLA DNGVPQNSYV ICRVFQKEGP GPRNGAQYGK PFNEKDWDSE  180
EEIDYVQAVP VAAVSAPALI LPSSSHISEE NDMHTSARGC TGQTSLSGLS RLMPSGTTHP  240
SAPGNQADDD ILSMLAIFDD ENALAGNENN GSELSLKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-4721589169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.164590.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g096140.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0120500.0CU012050.16 M.truncatula DNA sequence from clone MTH2-31E18 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461558.10.0NAC domain-containing protein 82 isoform X4
SwissprotQ9FY822e-86NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A072V2K10.0A0A072V2K1_MEDTR; NAC domain class transcription factor
STRINGAES728540.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.49e-87NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  4. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]