PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g098560.1
Common NameMTR_3g098560, Uni
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LFY
Protein Properties Length: 393aa    MW: 44460.2 Da    PI: 7.0008
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g098560.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY641.99.6e-19613781386
          FLO_LFY   1 mdpeafsaslfkwdpraaa.aapp..arlleeaavse.apleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlm 90 
                      mdp+af+aslfkwdpr++  +app   +ll  a++++ ap+    a   r+l +leelf+ayG+ry+t+akiaelGftvstLvdmkd+eldd+m
  Medtr3g098560.1   1 MDPDAFTASLFKWDPRTVLpTAPPlrPQLLDYAVTPStAPSPYYPARLPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDDELDDMM 94 
                      9***************9984334454333333332221334455555566688***************************************** PP

          FLO_LFY  91 kslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqe.ekeaagsggeglgeaelvaaeekksee 183
                      +sls+ifr+dllvGeryGikaa+raerrrl+eee   krr lls d+++aldalsqeglseepv + ekea+gsgg++  ++e++++ee     
  Medtr3g098560.1  95 NSLSQIFRWDLLVGERYGIKAAIRAERRRLDEEE--IKRRGLLSGDTTNALDALSQEGLSEEPVVQrEKEAVGSGGGS--TWEVAVVEE----- 179
                      ********************************88..88889**********************999677788888877..999998873..... PP

          FLO_LFY 184 ekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekc 277
                      ++k++ + +++r k+   k + d+ e+ee de+ee++ ++g erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq+iakerGekc
  Medtr3g098560.1 180 RRKRQ-QIRRRRMKM---KGNGDHGENEEGDEEEEDNISGGGERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQAIAKERGEKC 269
                      33333.223333333...345566666777777778888899**************************************************** PP

          FLO_LFY 278 PtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvP 371
                      PtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdee sn+lrr fkergenvGawrqacykplvaiaarqgwdida+fnahprLsiWYvP
  Medtr3g098560.1 270 PTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRGFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVP 363
                      ********************************************************************************************** PP

          FLO_LFY 372 tkLrqLChlerskas 386
                      tkLrqLCh+er++a+
  Medtr3g098560.1 364 TKLRQLCHAERNSAA 378
                      ***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016982.2E-2041378IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDPDAFTASL FKWDPRTVLP TAPPLRPQLL DYAVTPSTAP SPYYPARLPR ELGGLEELFQ  60
AYGIRYYTAA KIAELGFTVS TLVDMKDDEL DDMMNSLSQI FRWDLLVGER YGIKAAIRAE  120
RRRLDEEEIK RRGLLSGDTT NALDALSQEG LSEEPVVQRE KEAVGSGGGS TWEVAVVEER  180
RKRQQIRRRR MKMKGNGDHG ENEEGDEEEE DNISGGGERQ REHPFIVTEP GEVARGKKNG  240
LDYLFHLYEQ CREFLIQVQA IAKERGEKCP TKVTNQVFRY AKKAGASYIN KPKMRHYVHC  300
YALHCLDEEV SNELRRGFKE RGENVGAWRQ ACYKPLVAIA ARQGWDIDAI FNAHPRLSIW  360
YVPTKLRQLC HAERNSAAAS SSVSVGTAHL PF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1102163862172PROTEIN LEAFY
2vy2_A1e-1102163862172PROTEIN LEAFY
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179189RRKRQQIRRRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaf, leaflet, inflorescence and lateral shoot primordia on the main shoot axis, and in floral organ and carpel primordia.
Functional Description ? help Back to Top
Source Description
UniProtMay regulate indeterminacy during leaf and flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g098560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9281840.0AY928184.1 Medicago truncatula Unifoliata protein (Uni) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602745.10.0protein UNIFOLIATA
SwissprotO485590.0UNI_PEA; Protein UNIFOLIATA
TrEMBLQ5BN330.0Q5BN33_MEDTR; Floral meristem identity control protein LEAFY (LFY) protein
STRINGAES729960.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-108floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Wang H, et al.
    Control of compound leaf development by FLORICAULA/LEAFY ortholog SINGLE LEAFLET1 in Medicago truncatula.
    Plant Physiol., 2008. 146(4): p. 1759-72
    [PMID:18287485]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]