PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g098580.1
Common NameMTR_3g098580
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 262aa    MW: 29671.3 Da    PI: 6.4062
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g098580.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-1975124255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa a+++a+++++g
  Medtr3g098580.1  75 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAAVAYDEAALRFKG 124
                      7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.6E-3374133IPR001471AP2/ERF domain
SMARTSM003803.7E-3875138IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2275133IPR016177DNA-binding domain
PfamPF008471.3E-1275124IPR001471AP2/ERF domain
CDDcd000183.13E-2175133No hitNo description
PROSITE profilePS5103224.90875132IPR001471AP2/ERF domain
PRINTSPR003672.4E-117687IPR001471AP2/ERF domain
PRINTSPR003672.4E-1198114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDRRRESWEE EGKEDENLFP VFSERSQQDM SAIVSALTQV MGGNNNNEMH EASSIHNIEQ  60
SQPPQQDQGN VRRRHYRGVR QRPWGKWAAE IRDPKKAARV WLGTFETAEA AAVAYDEAAL  120
RFKGSKAKLN FPERVQSATE FGYNQQFHHL VSTTSNEQQS NPVPLQHFSR ETYSNPYQYA  180
AQAHLQASGS SNFNQDMLSF YGRDMFVSNS QPLSTTSPSS SSSSGLSQQQ QELLRLSMQY  240
GGSSSSSDPS MNWRDDMDRR Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2774137468ATERF1
3gcc_A1e-2774137468ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.147180.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g098580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1397080.0AC139708.15 Medicago truncatula clone mth2-9f16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602747.10.0ethylene-responsive transcription factor ERF114
TrEMBLG7J3970.0G7J397_MEDTR; AP2 domain class transcription factor
STRINGAES729980.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.15e-37ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]