PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g100040.1
Common NameMTR_3g100040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 360aa    MW: 38847.5 Da    PI: 4.2161
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g100040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.71.1e-15202238135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg+ +  Tp +Rrgp g++tLCnaCGl+++ kg+
  Medtr3g100040.1 202 CQHCGVNEnnTPAMRRGPAGPRTLCNACGLMWANKGT 238
                      *******999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.1E-46398IPR010399Tify domain
PROSITE profilePS5132011.6766398IPR010399Tify domain
PfamPF062001.1E-87097IPR010399Tify domain
PfamPF062031.1E-16131171IPR010402CCT domain
PROSITE profilePS5101713.285131173IPR010402CCT domain
SMARTSM004011.1E-9196249IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.9E-11196249No hitNo description
PROSITE profilePS501149.592196255IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-14200243IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.24E-15201245No hitNo description
PfamPF003201.8E-13202238IPR000679Zinc finger, GATA-type
PROSITE patternPS003440202229IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAEQPLPSED PATIPAIDDD DDDDEDYTDD GDDTMDELDE ESNGNSVNVE GTSIPATATA  60
AAAATRIGEL TLSFEGEVYV FPDVTHQKVQ AVLLFLGGSG AQPGMPTAEL PFDQNNRGMG  120
GIGKLPNLSR RIASLVRYRE KRKERCFDKK IRYTVRKEVA ERMHREKGQF APLKQSPGSS  180
SWNSAQGAGQ DGSPNPESLR RCQHCGVNEN NTPAMRRGPA GPRTLCNACG LMWANKGTLR  240
DLSKGGRNIS VEQSRPDPPV DVKPTVLEGE FSVIENEQGI SEEPSKTVGA EVLNDHASNP  300
GDEELSESAE HLTKTLPLVI YHSSENDDEQ EPVVELSNPS DAGMSNPSDT DIDIPGNFD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.172490.0glandular trichome| leaf| pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g100040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0759081e-146CU075908.9 M.truncatula DNA sequence from clone MTH2-31B23 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602887.20.0GATA transcription factor 19
SwissprotQ8GXL72e-60GAT24_ARATH; GATA transcription factor 24
TrEMBLG7J4K20.0G7J4K2_MEDTR; GATA transcription factor
STRINGAES731380.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-63ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]