PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g100040.2
Common NameMTR_3g100040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 256aa    MW: 27991 Da    PI: 5.2464
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g100040.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.36.5e-1698134135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg+ +  Tp +Rrgp g++tLCnaCGl+++ kg+
  Medtr3g100040.2  98 CQHCGVNEnnTPAMRRGPAGPRTLCNACGLMWANKGT 134
                      *******999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062036.8E-172767IPR010402CCT domain
PROSITE profilePS5101713.2852769IPR010402CCT domain
SMARTSM004011.1E-992145IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.59292151IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-1292145No hitNo description
Gene3DG3DSA:3.30.50.102.1E-1496139IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.59E-1597141No hitNo description
PfamPF003201.1E-1398134IPR000679Zinc finger, GATA-type
PROSITE patternPS00344098125IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MPTAELPFDQ NNRGMGGIGK LPNLSRRIAS LVRYREKRKE RCFDKKIRYT VRKEVAERMH  60
REKGQFAPLK QSPGSSSWNS AQGAGQDGSP NPESLRRCQH CGVNENNTPA MRRGPAGPRT  120
LCNACGLMWA NKGTLRDLSK GGRNISVEQS RPDPPVDVKP TVLEGEFSVI ENEQGISEEP  180
SKTVGAEVLN DHASNPGDEE LSESAEHLTK TLPLVIYHSS ENDDEQEPVV ELSNPSDAGM  240
SNPSDTDIDI PGNFD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.172490.0glandular trichome| leaf| pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g100040.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0759085e-69CU075908.9 M.truncatula DNA sequence from clone MTH2-31B23 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602887.20.0GATA transcription factor 19
SwissprotQ8GXL74e-45GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A072V1260.0A0A072V126_MEDTR; GATA transcription factor
TrEMBLG7J4K20.0G7J4K2_MEDTR; GATA transcription factor
STRINGAES731380.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-49ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]