PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g100050.1
Common NameMTR_3g100050
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 310aa    MW: 34206.5 Da    PI: 5.8294
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g100050.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.82.2e-16200236135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ +g+
  Medtr3g100050.1 200 CTHCGISSksTPMMRRGPSGPRTLCNACGLFWANRGT 236
                      *****99999***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.3E-1065100IPR010399Tify domain
PROSITE profilePS5132014.91165100IPR010399Tify domain
PfamPF062001.5E-126999IPR010399Tify domain
PfamPF062032.0E-15132174IPR010402CCT domain
PROSITE profilePS5101712.878132174IPR010402CCT domain
SMARTSM004018.2E-15194247IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.238194250IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-12197248No hitNo description
Gene3DG3DSA:3.30.50.106.7E-16198241IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.63E-15199241No hitNo description
PfamPF003205.5E-14200236IPR000679Zinc finger, GATA-type
PROSITE patternPS003440200227IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MYNSMNMSDQ IKNNEDPDNN NNHIHFDSPT LEDASGEGEG QINDVSLENV YVSGDGNHPD  60
MSVQQFDDSS QLTLSFRGQV YVFDSVTPEK VQSVLLLLGG CELNPGSQCL DTSPLNQRSG  120
AEFPTRCSQP QRAASLIRFR QKRKERNFDK KVRYEVRQEV ALRMQRSKGQ FTSAKKQDGG  180
NSWGSDPESG QDVVQSETSC THCGISSKST PMMRRGPSGP RTLCNACGLF WANRGTLRDL  240
STARRNHEQH TLGSPEQGMR DLSNPKRNHQ PHPLPQPEQV GEGNEDLNCG TAPAHNDSVD  300
DKTAVVSDQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.500.0pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g100050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1386620.0BT138662.1 Medicago truncatula clone JCVI-FLMt-15G4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602888.10.0GATA transcription factor 25
SwissprotQ9LRH63e-75GAT25_ARATH; GATA transcription factor 25
TrEMBLG7J4K30.0G7J4K3_MEDTR; GATA transcription factor
STRINGAES731390.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.32e-77GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]