PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g100180.1
Common NameMTR_3g100180
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 957aa    MW: 100839 Da    PI: 10.1668
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g100180.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.1e-10201246144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                      r++W++eEd ll dav+++G g+W+t a+      +R++ q+  rw
  Medtr3g100180.1 201 RKAWSEEEDNLLRDAVQKWGEGNWATMAKGDSfpIKRSATQLSQRW 246
                      789************************9865555447888877777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.859196254IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-12197253IPR009057Homeodomain-like
SuperFamilySSF466897.9E-11199252IPR009057Homeodomain-like
SMARTSM007172.3E-10200252IPR001005SANT/Myb domain
PfamPF002499.8E-9201246IPR001005SANT/Myb domain
CDDcd116603.92E-12202251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 957 aa     Download sequence    Send to blast
MPEKKSKKVT FSENAIATIT QRYDVATVLT VFQELSHYAA DENFNWNELV KKTTTGISTA  60
REYQMLWRHL AYGYSFPEDL DQEAQPMDDD SDLDCELESL PSGCAESTSE TSACVKVIIA  120
SRTLSESTPS SATIEAPMTV NFPVCHSSRT SNISQPSILM DQSSIMFPVT VPRQTLPTVS  180
STDALETKVT IGGTAASKRK RKAWSEEEDN LLRDAVQKWG EGNWATMAKG DSFPIKRSAT  240
QLSQRWSALR KKDGSANPGP TATTVTTNTQ YTAEQLATRH SLNLALDMPF KKLSAPGVTD  300
PGRTSTSIKN QVQPRNTAQF STIRSSVPSQ RPAQQACGSP TKPKLASENS VSKCNAMSAR  360
ESKPGIVHSG AQTQTVSRTN AAPHLMVSQA KNVAHTVPAC STLTKTPISA GGHQKIRSNV  420
PAGSSLTKTP ISTGLAPVQP NVNVPDGRSL SRTPIAAGLP SNQKVHSNVP TGNSLTKTPI  480
SSCLPSNQKV HLNVSAGNSL TKTPITAGLP SNQKAHSNVP AGSSLTKTPI TAGLPSNQKA  540
HSNVPAGSSL TKTPISVGLP SNQKAHSNVP AGSSLTKTPI SVGLPSDKKV HLNVHVASSL  600
TKTPISASSP SNQKVHSNVP VGSSLTKTPI SSGLSSDKKV HSNVPVASSL TKTPIYAGLP  660
SGPKVHSNVP AGNSLTKTPV SASSPSDPKV HSNVPAGNSV TKTPISAGLP SDPKVHSNVP  720
AGNTLTKTPI SAGLPSDPKV HSNVPAGNSL TKIPISAGFP SDPKVHSNVP AGNSLTKTPI  780
SACLPSDPKV HSNVLAGNSL TKTPISTGLP SDQKDKHVTS VKEEEKRLAE PGSTPKENVK  840
EEASTSTTEG QVNRKLDKAR LDLDKAKSMP SEEVLEHKAV PQNPVGSEER GSVKNSNFTP  900
NKATENGNDN LNKESQNLNQ DKKTSSVNEN SQHQNMKEKL VNLPKQDECR QGLEVP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.113910.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g100180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU1047740.0CU104774.5 M.truncatula DNA sequence from clone MTH2-43L10 on chromosome 3, complete sequence.
GenBankCU1376400.0CU137640.12 M.truncatula DNA sequence from clone MTH2-50D4 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024635134.10.0mucin-17 isoform X1
RefseqXP_024635135.10.0mucin-17 isoform X1
RefseqXP_024635136.10.0mucin-17 isoform X2
TrEMBLG7J5260.0G7J526_MEDTR; Myb-like DNA-binding domain protein
STRINGAES731510.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.15e-49MYB_related family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]