PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g101520.2
Common NameMTR_3g101520
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 224aa    MW: 25302 Da    PI: 10.146
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g101520.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-16126215198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k +++s+v+   +l lp++f++++  +k ++  +tl de+g +   ++    ++ +  l++GW++F+ a++L +gD ++F+l++r+ f  +v
  Medtr3g101520.2 126 FVKSMLQSHVTGGFWLGLPNHFCRKNL-PK-RDEVMTLIDEDGDESPTTY--LAHKTG--LSAGWRGFAIAHNLVDGDALIFELVKRTAF--KV 211
                      89*********************9994.33.5568***************..666655..9************************99999..88 PP

                      EEE- CS
               B3  95 kvfr 98 
                       ++r
  Medtr3g101520.2 212 YIIR 215
                      8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-24119217IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-20119216IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-25124215No hitNo description
SMARTSM010193.7E-23126217IPR003340B3 DNA binding domain
PROSITE profilePS5086311.716126217IPR003340B3 DNA binding domain
PfamPF023621.2E-14126215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVAKASSYEE SRRKRMEENQ KRMEALSLTK LSQSLHKSSS PISKPSPSKP RTPIKKELVV  60
VRRSGRVANM PAPVYKEILI DSVKIPRNRI SRDYSKRVYA SDEARMEAME KADKLLSDLD  120
SDHPTFVKSM LQSHVTGGFW LGLPNHFCRK NLPKRDEVMT LIDEDGDESP TTYLAHKTGL  180
SAGWRGFAIA HNLVDGDALI FELVKRTAFK VYIIRVNEGK QDD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g101520.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1420560.0BT142056.1 Medicago truncatula clone JCVI-FLMt-7B11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024633829.11e-165B3 domain-containing protein At3g19184 isoform X2
SwissprotQ1G3M33e-75Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A072V1N61e-164A0A072V1N6_MEDTR; B3 domain transcription factor
STRINGAES732761e-149(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-60B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]