PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g101520.4
Common NameMTR_3g101520
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 232aa    MW: 26245.1 Da    PI: 10.044
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g101520.4genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.11.2e-16134223198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k +++s+v+   +l lp++f++++  +k ++  +tl de+g +   ++    ++ +  l++GW++F+ a++L +gD ++F+l++r+ f  +v
  Medtr3g101520.4 134 FVKSMLQSHVTGGFWLGLPNHFCRKNL-PK-RDEVMTLIDEDGDESPTTY--LAHKTG--LSAGWRGFAIAHNLVDGDALIFELVKRTAF--KV 219
                      89*********************9994.33.5568***************..666655..9************************99999..88 PP

                      EEE- CS
               B3  95 kvfr 98 
                       ++r
  Medtr3g101520.4 220 YIIR 223
                      8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-24127225IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-20127224IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-25132223No hitNo description
PROSITE profilePS5086311.716134225IPR003340B3 DNA binding domain
SMARTSM010193.7E-23134225IPR003340B3 DNA binding domain
PfamPF023621.3E-14134223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVAKASSYEE SRRKRMEENQ KRMEALSLTK LSQSLHKSSS PISKPSPSKP RTPIKKELVV  60
VRRSGRVANM PAPVYKEILI DSVKIPRNRI SRCGGYDKYR DYSKRVYASD EARMEAMEKA  120
DKLLSDLDSD HPTFVKSMLQ SHVTGGFWLG LPNHFCRKNL PKRDEVMTLI DEDGDESPTT  180
YLAHKTGLSA GWRGFAIAHN LVDGDALIFE LVKRTAFKVY IIRVNEGKQD D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g101520.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1420560.0BT142056.1 Medicago truncatula clone JCVI-FLMt-7B11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603025.11e-172B3 domain-containing protein At3g19184 isoform X1
RefseqXP_024633828.11e-172B3 domain-containing protein At3g19184 isoform X1
SwissprotQ69V366e-75Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLG7J6B91e-171G7J6B9_MEDTR; B3 domain transcription factor
STRINGAES732761e-172(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-59B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]