PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g103030.1
Common NameMTR_3g103030
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 322aa    MW: 35936.4 Da    PI: 5.647
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g103030.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-102452851055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR++iN+++ +L+ l+P+      +K++ +++Le A++Y+k Lq
  Medtr3g103030.1 245 RKRREKINERLRTLQNLVPNG-----TKVDISTMLEDAIQYVKFLQ 285
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14235300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.421235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-13240294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-12241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.68E-11244289No hitNo description
PfamPF000101.1E-7245285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
METLGAIPDD GEWECFRRIF DTDNHDDSPP QLLDQTSLLL GENDGNFGVQ SMFCSPSEAE  60
GNINTNVFYS FDSHINYNSQ ESNHSTQSHT NYYFDCSDHV AANNSDKTEN FDHSQVQPIV  120
SSTKQLKLKR MLGVPEFDVQ VEDKTNSCGN PTKKHRASKD VQRYVNNAES KKSKKVNRNE  180
NKAEEANTSI DGHNSSGYTS EEQNMCEENS GGASAASKST VSLNSNGKKR ASRGSATDPQ  240
SLYARKRREK INERLRTLQN LVPNGTKVDI STMLEDAIQY VKFLQLQIKL LSSDDLWMYA  300
PIAYNGLDIG FNLNRKISPP P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227247KKRASRGSATDPQSLYARKRR
2244249RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g103030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461773.10.0transcription factor bHLH54
TrEMBLA0A072V3900.0A0A072V390_MEDTR; Putative transcription factor bHLH family
STRINGXP_004501802.11e-134(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.15e-56ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]