PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g104750.1
Common NameMTR_3g104750
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 165aa    MW: 18739.4 Da    PI: 4.8096
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g104750.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1016.9e-32103161159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg++WrKYG+K+vk+s++pr+YYrC+  gC+vkk+ver+ +dp++v++tYeg+H+h+
  Medtr3g104750.1 103 LDDGFRWRKYGKKMVKNSPNPRNYYRCSADGCQVKKRVERDVDDPSYVITTYEGTHTHP 161
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-3488162IPR003657WRKY domain
SuperFamilySSF1182901.44E-2896162IPR003657WRKY domain
PROSITE profilePS5081129.95398163IPR003657WRKY domain
SMARTSM007742.7E-37103162IPR003657WRKY domain
PfamPF031069.2E-26104161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MTDKNPISPN SPDSDFTNQW SLELSEYLKF DDDIWPDDDT EPFVSEHVPN RDIQQANEFV  60
GDFGGSGSQI DGSSSRGVSN EGEKKEIRDH KVAFKTKSEV EILDDGFRWR KYGKKMVKNS  120
PNPRNYYRCS ADGCQVKKRV ERDVDDPSYV ITTYEGTHTH PSSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2593160774Probable WRKY transcription factor 4
2lex_A1e-2593160774Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g104750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9673161e-123CT967316.8 M.truncatula DNA sequence from clone MTH2-189G21 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603180.21e-120probable WRKY transcription factor 50
TrEMBLG7J8C41e-118G7J8C4_MEDTR; WRKY family transcription factor
STRINGAES734311e-119(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.16e-42WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]