PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g105710.1
Common NameMTR_3g105710
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CO-like
Protein Properties Length: 291aa    MW: 31869.7 Da    PI: 7.4371
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g105710.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.94.7e-09447441
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                     + C+ +++  ++l+C+ ++ +lC  C ++ H        H +v+
  Medtr3g105710.1  4 KLCDSCKSATATLYCRPDSAFLCGACDSKVHAAnklasrHPRVT 47
                     68*****************************6567777787765 PP
2zf-B_box25.23.5e-084691342
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      + C+ +e+ +++  C+ +   lC +C   +H        H++vp+
  Medtr3g105710.1 46 VTLCEVCEQAPAHVTCKADAASLCITCDRDIHTAnplaarHERVPV 91
                     578*****************************66899999999986 PP
3CCT70.64e-24232275144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  Medtr3g105710.1 232 REARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 275
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.7E-14148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.779148IPR000315B-box-type zinc finger
PfamPF006432.7E-7447IPR000315B-box-type zinc finger
CDDcd000211.90E-8548No hitNo description
PROSITE profilePS5011910.7224491IPR000315B-box-type zinc finger
PfamPF006432.8E-64691IPR000315B-box-type zinc finger
CDDcd000213.37E-74791No hitNo description
SMARTSM003361.5E-84991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.906232274IPR010402CCT domain
PfamPF062035.1E-18232274IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MASKLCDSCK SATATLYCRP DSAFLCGACD SKVHAANKLA SRHPRVTLCE VCEQAPAHVT  60
CKADAASLCI TCDRDIHTAN PLAARHERVP VTPFFESNTS HSVKSLNNNN NNYDAVKDEA  120
EAASWLISDP KADLNSSPYL FSDSEAIPFM DLDYGVIEHK NDGVVPVHGN FDPFVSAYKN  180
NNVHLHTELE TPSQSQISQS VSSSSMDVGV VPDANTVPEI SNCGYGTVAV DREARVMRYR  240
EKRKNRRFEK TIRYASRKAY AETRPRIKGR FAKRTDAVDS ISGYGVVPTC *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.153400.0flower| leaf| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g105710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0135240.0CU013524.5 M.truncatula DNA sequence from clone MTH2-89B7 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603265.10.0zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T92e-92COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLG7JPB90.0G7JPB9_MEDTR; Putative transcription factor C2C2-CO-like family
STRINGAES735160.0(Medicago truncatula)
STRINGAES877840.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.12e-90CONSTANS-like 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]