PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g106230.1
Common NameMTR_3g106230
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 229aa    MW: 25573.5 Da    PI: 8.1529
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g106230.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000257496123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C++ F ++  L  H++ H
  Medtr3g106230.1 74 FTCNYCKRKFFSSQALGGHQNAH 96
                     89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.37E-671101No hitNo description
PROSITE profilePS5015711.32374101IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEMPLQNPHE TFEEEEKEAK VDTSFDLNVP NNDCDLGCNS MSNLVTCLDI DNSSKTSSEN  60
FTCGSESTSE PRFFTCNYCK RKFFSSQALG GHQNAHKRER SIAKRGRRTM FSATGTTSFL  120
HNHLHHRYAN MASLLPLYGA NSNSMRPLSI KVHSIVQKPI HNFSSNGFGT ESTYYGYHGW  180
SRPLMNQQPG RGKLLMQTLQ ETGLLSQSSV GRFEEVKKDM VNSGTGLN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g106230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0196010.0CU019601.8 M.truncatula DNA sequence from clone MTH2-12A22 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603313.11e-172zinc finger protein 1
TrEMBLG7J9W41e-171G7J9W4_MEDTR; Putative transcription factor C2H2 family
STRINGAES735641e-171(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.11e-28zinc finger protein 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]