PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g109310.1
Common NameMTR_3g109310
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 296aa    MW: 32478.9 Da    PI: 5.6119
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g109310.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.31.6e-13125176455
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                       kr+rrk +N e+ArrsR RK+a + eLe  v++L+ eN +L k+    +++
  Medtr3g109310.1 125 MKRQRRKDSNCESARRSRWRKQAHLSELEAQVEKLKLENATLYKQFTDTSQQ 176
                      7*****************************************9776665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.7E-11121177No hitNo description
SMARTSM003388.1E-13122186IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.588124187IPR004827Basic-leucine zipper domain
PfamPF001704.2E-10125171IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.46E-10125177No hitNo description
CDDcd147025.43E-23127178No hitNo description
PROSITE patternPS000360129144IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MATTESDLDE FLNLDYEFRY PSLADTEAFM TGVCSAAFQT LLLPDVVSSF STCGGLTNSQ  60
NFTPKHSTIT ASQSSIYGTV GSPVSANKPN SRENHIKGTA SGSSDPSDED NESGPCEQIT  120
NPVDMKRQRR KDSNCESARR SRWRKQAHLS ELEAQVEKLK LENATLYKQF TDTSQQFHEA  180
DTNNRVLKSD VEALRAKVKL AEDMVTRSSF TTSLNNQFLH NQCQMSTPPQ LNIRRMPHVS  240
PTINFQQGNS ASYGGVAVGV HNSNLAGFGN LDMTYNDVVD NGVLSNAMSC VTIWP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138145RRSRWRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.226430.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g109310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1354131e-166AC135413.43 Medicago truncatula clone mth2-16n19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603580.10.0bZIP transcription factor RISBZ4
SwissprotQ6H5003e-47RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLG7J2W20.0G7J2W2_MEDTR; BZIP transcription factor
STRINGAES738310.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41953458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.19e-49basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]