PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g109760.1
Common NameMTR_3g109760
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 319aa    MW: 35444.1 Da    PI: 6.2692
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g109760.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.4e-18209243135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Medtr3g109760.1 209 CLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRL 243
                      99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.8E-801297IPR016679Transcription factor, GATA, plant
SMARTSM004011.4E-16203253IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.308203239IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-14204240IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.28E-15204266No hitNo description
CDDcd002021.24E-14208255No hitNo description
PROSITE patternPS003440209234IPR000679Zinc finger, GATA-type
PfamPF003206.3E-16209243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEAQEFFQSD NNSNTNNVNT AASDHFIVED LFDFSNEDVA IEDPTFEESP PTNSNDSPPL  60
ETNPTSNFFT DNSCQNSADG PFSGELSVPY DDLAELEWVS KFAEESFSSE DLHKLQLISG  120
LKAPNNVASK PYEESNPTVH SQVSVPAKAR SKRSRVPPCN WTSRLLVLSP TTTTTTTTTT  180
SSHSDTMAPP KKPSPRKRDP NDGGEGRKCL HCATDKTPQW RTGPLGPKTL CNACGVRYKS  240
GRLVPEYRPA ASPTFVLTKH SNSHRKVQEL RRQKEMMRAQ QHQLLQLQHH HSIMFEGPSN  300
GDDYLIHQHV GPDFTHLI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.18960.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g109760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1474280.0AC147428.6 Medicago truncatula clone mth2-34i10, complete sequence.
GenBankCR9563920.0CR956392.5 M.truncatula DNA sequence from clone MTH2-52P12 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603626.20.0GATA transcription factor 9
SwissprotP697811e-87GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A396J2G60.0A0A396J2G6_MEDTR; GATA transcription factor
TrEMBLG7J3H00.0G7J3H0_MEDTR; GATA transcription factor
STRINGAES738770.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-83GATA transcription factor 12
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]