PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g109930.1
Common NameMTR_3g109930
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20019.7 Da    PI: 9.6696
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g109930.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.68.7e-151555747
                     HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
           SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                      +r  tfskR+ g++ K  ELS+LC+a+ a+ii s++ +l+
  Medtr3g109930.1 15 NKRRDTFSKRKLGLFNKVTELSILCNAKTALIITSPNKNLH 55
                     56788********************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.054161IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-8160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-161072IPR002100Transcription factor, MADS-box
PfamPF003199.5E-151555IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-52338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-53859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MASYGWKQHK AKPSNKRRDT FSKRKLGLFN KVTELSILCN AKTALIITSP NKNLHACGYP  60
NHDTVIKHFF DKENPVINTE KGKQDEYTIE TSRLQHETIQ ERLKEEKNNL QAVKETNNSS  120
SCLPSWWDHS IDDMALESLK QFKTSLKKLK LNLDASLQGK EIHMNSCSSS TSNII*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g109930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627433.13e-78agamous-like MADS-box protein AGL29
TrEMBLA0A072V2S91e-126A0A072V2S9_MEDTR; MADS-box transcription factor family protein
STRINGAET019091e-77(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132271027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-19AGAMOUS-like 62
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]