PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g109982.1
Common NameMTR_3g109982
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 775aa    MW: 88853.2 Da    PI: 9.4203
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g109982.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.61.8e-10648695855
                      HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                      ++k +N  +ArrsR+RK+a + eLe  v +L+ eN +L k+    +++
  Medtr3g109982.1 648 IKKVSNPKSARRSRRRKQAHLFELESQVGKLKLENATLYKQFTDASQQ 695
                      699***********************************9876655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813833.27E-101163IPR001810F-box domain
Gene3DG3DSA:3.80.10.101.7E-1811291IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5018110.2921265IPR001810F-box domain
PfamPF006464.8E-51446IPR001810F-box domain
SMARTSM002568.9E-41859IPR001810F-box domain
SuperFamilySSF520582.65E-865420IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077239.1E-8159184IPR013101Leucine-rich repeat 2
PfamPF077230.001251275IPR013101Leucine-rich repeat 2
PfamPF083874.4E-13399442IPR006566FBD domain
SMARTSM005790.0039403478IPR006566FBD domain
SMARTSM003386.3E-4639705IPR004827Basic-leucine zipper domain
PfamPF001701.3E-7649689IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.83E-7649696No hitNo description
PROSITE patternPS000360649663IPR004827Basic-leucine zipper domain
CDDcd147022.26E-7649697No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-7652697No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MSRRLRISFR RKDRISDLPD TLLHEILSFL PTKDAAATTI LSKRWNPLFL SQLMLRFDDH  60
SFTDHFAFRK FFYSFMSMRD KSLPILSFQL NCRYSFIDKN DFNNLVYAAI TSGVENLSIN  120
LCHLNETTLP SFILTSKTLT SLKLKRVTLN EVPFVDLPSL KVLHLESVTF TCPEYLMKLL  180
SSCPILEKLE ANDSITTTFF KVIGRDRGEF IKCRYSETIL PSFILTTKTL TQLKLKRITL  240
NQVPFVDLPL LKVLHLESVS FTYYWYITTL LSGCPVLEEL EAKDVIVTRR CMVIRTGREV  300
LNLSNLVRAN ISNGLLEFDW LYNVNLLRIQ ETVPVYLHGM FPNLTHLELI FNFMPIFASL  360
KWNCLMKQLL PNFPKLQTLI IREADTVTNS GDKDWEDPTI VPECLLSHLT TCSLRNYSRI  420
NCEFQFANYI IRNSRVLSTM IIQSAESVET NTKHQMFMEL SSLCPRISTY ATNAIAVHIS  480
LPPREHHISV IWLKIPTKAE GFSWVPKYAI EETAPKDVYR KRKSCRPSPS DRVARETMTG  540
VQEDRISPFS ADEKEQVCRG ISSKKKSVVE WICLQPLKDE SIRFISDIKF SLTLLCSRYS  600
DKLALLALCS DESVSSKVRP DNASMEAIGQ LGEHIIPQKH LSKYIMGIKK VSNPKSARRS  660
RRRKQAHLFE LESQVGKLKL ENATLYKQFT DASQQFHEAD TNNQVLKSDV EALRAKVKLV  720
KHIVTRSSFI TSLNNQFLHN QCQMSTPPQL NTTTSIRCMP HVSPTINVQQ GNSA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1657664RRSRRRKQ
2659664SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.226431e-109root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g109982.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024635657.10.0FBD-associated F-box protein At4g10400-like
RefseqXP_024635687.10.0FBD-associated F-box protein At4g10400-like
TrEMBLA0A072V2C20.0A0A072V2C2_MEDTR; F-box/RNI/FBD-like domain protein, putative
STRINGAES836270.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.14e-23basic leucine zipper 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]